Training materials
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e-learning
Pre-processing of 10X Single-Cell ATAC-seq Datasets
• Beginner10x Single Cell epigenetics -
e-learning
Inferring single cell trajectories with Monocle3 (R)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Large genome assembly and polishing
• BeginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
e-learning
Removing the effects of the cell cycle
• BeginnerSingle Cell -
e-learning
Comparing inferred cell compositions using MuSiC deconvolution
• BeginnerSingle Cell transcriptomics -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• BeginnerSingle Cell data management transcriptomics -
e-learning
NCBI BLAST+ against the MAdLand
• BeginnerSequence analysis Sequence analysis plants -
e-learning
Visualization of Climate Data using NetCDF xarray Map Plotting
• BeginnerEcology Biodiversity Ecology pangeo -
e-learning
Preparing genomic data for phylogeny reconstruction
• BeginnerEcology Biodiversity Ecology biodiversity data handling functional annotation phylogeny -
e-learning
Somatic Variant Discovery from WES Data Using Control-FREEC
• BeginnerGenetic variation Variant Analysis