Materials - TeSS (Training eSupport System)

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- Scientific topic
- Comparative transcriptomics43
- Transcriptome43
- Transcriptomics43
- Exomes37
- Genome annotation37
- Genomes37
- Genomics37
- Personal genomics37
- Synthetic genomics37
- Viral genomics37
- Whole genomes37
- Biodiversity35
- Algorithms34
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- Biological sequences33
- Metagenomics33
- Sequence analysis33
- Sequence databases33
- Shotgun metagenomics33
- Computational ecology30
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- Ecosystem science30
- Bayesian methods29
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- Microbial ecology29
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- Molecular community analysis29
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- Probability29
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- Statistics and probability29
- Assembly23
- Sequence assembly23
- Bottom-up proteomics21
- Discovery proteomics21
- MS-based targeted proteomics21
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- Metaproteomics21
- Peptide identification21
- Protein and peptide identification21
- Proteomics21
- Quantitative proteomics21
- Targeted proteomics21
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- Antimicrobial stewardship19
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- Microbial physiology19
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- Microbiological surveillance19
- Microbiology19
- Molecular infection biology19
- Molecular microbiology19
- Taxonomy15
- Data management13
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- DNA variation11
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- Genetic variation11
- Genomic variation11
- Imaging11
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- Mutation11
- Optical super resolution microscopy11
- Photonic force microscopy11
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- Polymorphism11
- Somatic mutations11
- Evolution8
- Evolutionary biology8
- DNA metabarcoding7
- Environmental metabarcoding7
- Exometabolomics7
- LC-MS-based metabolomics7
- MS-based metabolomics7
- MS-based targeted metabolomics7
- MS-based untargeted metabolomics7
- Mass spectrometry-based metabolomics7
- Metabarcoding7
- Metabolites7
- Metabolome7
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- Operation
- Data handling1
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- Processing1
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- Tool
- Galaxy273
- FastQC32
- MultiQC22
- SAMtools21
- scikit-learn16
- BEDTools15
- BWA13
- Falco13
- SCANPY13
- DeepTools12
- fastp12
- BLAST11
- Cutadapt11
- taxonomy_krona_chart10
- GEMINI9
- Bandage8
- FASTX-Toolkit8
- NanoPlot8
- QUAST8
- ggplot28
- FreeBayes7
- JBrowse7
- Trimmomatic7
- BamTools6
- STAR6
- Biopython5
- Flye5
- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- Trim Galore5
- Unicycler5
- anndata5
- kraken25
- BUSCO4
- Bowtie 24
- DESeq24
- Diamond4
- Galaxy Image Analysis4
- HISAT24
- KrakenTools4
- MACS4
- MaxQuant4
- Minimap24
- Salmon4
- Workflow4Metabolomics4
- annotatemyids4
- bx-python4
- mothur4
- scikit-image4
- snpEff4
- BCFtools3
- Bracken3
- Bwa-mem23
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- GOseq3
- Galactic Circos3
- GraPhlAn3
- MAFFT3
- MSstats3
- Newick Utilities3
- RSeQC3
- RStudio3
- SeqCode3
- SortMeRNA3
- Stacks3
- export2graphlan3
- humann3
- msConvert3
- seqtk3
- xcms3
- Bakta2
- Bowtie2
- Cardinal2
- CellProfiler2
- ChIPpeakAnno2
- Combine Metaphlan and HUMAnN2
- FASTQE2
- FastTree2
- GECKO2
- GOEnrichment2
- GenomeScope 2.02
- HUMAnN22
- Heinz2
- InterProScan (EBI)2
- JBrowse 22
- MAGeCK2
- MEME2
- Medaka2
- Merqury2
- Open Babel2
- R2
- Racon2
- Recentrifuge2
- RepeatMasker2
- SPAdes2
- SRA Software Toolkit2
- StringTie2
- TRANSIT2
- Targetfinder.org2
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- Standard database or policy
- PRoteomics IDEntifications database1
- The Observational Medical Outcomes Partnership Common Data Model1
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- Content provider
- GTN394
- ELIXIR Estonia5
- Cloud-SPAN1
- ELIXIR1
- Pattern Institute1
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- Keyword
- Single Cell38
- biodiversity35
- microgalaxy33
- Foundations of Data Science31
- Ecology30
- Statistics and machine learning29
- jupyter-notebook28
- Microbiome27
- Transcriptomics27
- FAIR Data, Workflows, and Research24
- Genome Annotation20
- Proteomics20
- Assembly19
- Using Galaxy and Managing your Data18
- Climate17
- FAIR principles16
- HemaFAIR16
- Introduction to Galaxy Analyses16
- fair16
- Epigenetics13
- Open Science13
- interactive-tools13
- metagenomics13
- earth-system12
- paper-replication12
- prokaryote12
- European research projects11
- MIGHTS11
- Metadata11
- Research Data Management11
- Sequence analysis11
- Variant Analysis11
- work-in-progress11
- data stewardship10
- plants10
- ocean9
- Data reuse8
- Data sharing8
- Evolution8
- assembly8
- gmod8
- label-free8
- nanopore8
- DDA7
- EBV dataset7
- EBV workflow7
- Metabolomics7
- cyoa7
- dmp7
- ecology7
- español7
- jbrowse17
- metabarcoding7
- Imaging6
- covid196
- data management6
- deutsch6
- illumina6
- italiano6
- ro-crate6
- transcriptomics6
- 10x5
- 16S5
- HELIOS5
- Rare Diseases5
- bacteria5
- label-TMT115
- metatranscriptomics5
- mouse5
- taxonomic profiling5
- Healthcare4
- QC4
- Visualisation4
- diversity4
- genetic composition EBV class4
- pangeo4
- workflows4
- Bioimaging3
- ChIP-seq3
- Data Visualization3
- Data visualisation3
- Digital Humanities3
- FAIR3
- Hemoglobinopathies3
- Image analysis using Deep Learning3
- Image segmentation3
- Overlay3
- R3
- RAD-seq3
- Synthetic Biology3
- amr3
- bioimageio3
- climate3
- collections3
- data cleaning3
- data import3
- deep-learning3
- essential genes3
- eukaryote3
- gbif3
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- Competency level
- Beginner
- Intermediate112
- Not specified22
- Advanced12
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- Licence
- Creative Commons Attribution 4.0 International420
- MIT License2
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- Target audience
- Students
- Galaxy Administrators111
- Researchers50
- Instructors49
- PhD candidate26
- Biologists25
- Data stewards22
- Life Science Researchers22
- PhD candidates20
- Bioinformaticians17
- Data Scientist16
- Data managers16
- Scientists16
- Data Managers14
- bioinformaticians14
- PhD students13
- PhD Students12
- Data Scientists11
- Researcher10
- Researcher in life sciences10
- Clinicians8
- Research Scientists8
- Beginner7
- Bench biologists7
- Biomedical Researchers7
- Computational biologists7
- Life scientists7
- Master students7
- biologists7
- Biomedical researchers6
- Trainers6
- Chemists5
- PI5
- data stewards5
- modelers5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Laboratory technicians4
- Scientific community4
- Training Designers4
- Training instructors4
- Veterinarians4
- project manager4
- Academia/ Research Institution3
- Beginners3
- Bioinformatician3
- Bioinformatician, Bioanalysts3
- Biologists, Genomicists, Computer Scientists3
- Curators3
- Data Steward3
- Healthcare3
- Industry3
- Life Scientists3
- Non-Profit Organisation3
- Post Docs3
- Post-Doctoral Fellows3
- beginner bioinformaticians3
- biocurators3
- data steward / data manager3
- life scientists3
- researchers3
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Clinical Scientists2
- Data Manager2
- Database users2
- Graduate Students2
- Graduate students2
- Ontologists2
- Patient Advocates 2
- PhD2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
- Policy makers2
- Postdocs and Staff members2
- Principal Investigators (PIs)2
- Professor2
- Research scientists2
- Staff2
- Technicians2
- Undergraduate students2
- computational scientists2
- data managers2
- database managers2
- plant researchers2
- policy officer2
- post-docs2
- software developers, bioinformaticians2
- rare disease patients representatives1
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Beginners in statistics1
- Biochemists1
- Bioimage Analysts1
- Biologists and bioinformaticians1
- Biologists interested in learning about RNA-seq1
- Biophysicists1
- Biotechnology Companies1
- Computer Vision scientists1
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- Author
- Bérénice Batut55
- Helena Rasche30
- Saskia Hiltemann29
- Yvan Le Bras25
- Anton Nekrutenko23
- Subina Mehta19
- Katarzyna Kamieniecka17
- Krzysztof Poterlowicz17
- Anne Fouilloux16
- Marie Josse15
- Mehmet Tekman15
- Bazante Sanders14
- Nicola Soranzo14
- Julia Jakiela13
- Wendi Bacon13
- Björn Grüning12
- Katherine Do12
- Maria Doyle12
- The Carpentries12
- Anthony Bretaudeau11
- Anup Kumar11
- Pavankumar Videm11
- Dave Clements10
- Donny Vrins10
- Khaled Jum'ah10
- Paul Zierep10
- Simon Gladman10
- Cristóbal Gallardo9
- Delphine Lariviere9
- James Johnson9
- Anika Erxleben8
- Kaivan Kamali8
- Joachim Wolff7
- Laura Cooper7
- Pratik Jagtap7
- Robert Andrews7
- Wolfgang Maier7
- Andrew Mason6
- Anna Syme6
- Anne Pajon6
- Branka Franicevic6
- Coline Royaux6
- Melanie Föll6
- Michael Charleston6
- Morgan Howells6
- Philippe Rocca-Serra6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Alexandre Cormier5
- Daniel Blankenberg5
- Dechen Bhuming5
- Diana Pilvar5
- Emma Leith5
- Erwan Corre5
- Kellie Snow5
- Korneel Hens5
- Laura Leroi5
- Munazah Andrabi5
- Nick Juty5
- Polina Polunina5
- Saskia Lawson-Tovey5
- Stéphanie Robin5
- Alex Ostrovsky4
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Beatriz Serrano-Solano4
- Clemens Blank4
- Diana Chiang Jurado4
- Engy Nasr4
- Florian Heyl4
- Fotis E. Psomopoulos4
- Gildas Le Corguillé4
- Hélène Chiapello4
- Mallory Freeberg4
- Marisa Loach4
- Praveen Kumar4
- Ray Sajulga4
- Simone Leo4
- Tristan Reynolds4
- Vivek Bhardwaj4
- Andrea Bagnacani3
- Avans Hogeschool3
- Belinda Phipson3
- Caterina Fuster-Barceló3
- Daniela Schneider3
- Fidel Ramirez3
- Florian Christoph Sigloch3
- Guillaume Gricourt3
- Ioana Popescu3
- Jean-Loup Faulon3
- Jeremy Goecks3
- Joan Hérisson3
- Junhao Qiu3
- Kenza Bazi-Kabbaj3
- Leonid Kostrykin3
- Lisanna Paladin3
- Lucille Delisle3
- Marius van den Beek3
- Mateo Boudet3
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- Contributor
- Saskia Hiltemann335
- Helena Rasche286
- Björn Grüning230
- Bérénice Batut132
- Nicola Soranzo76
- Cristóbal Gallardo65
- Anthony Bretaudeau50
- Wendi Bacon49
- Niall Beard48
- Martin Čech46
- Mehmet Tekman40
- Teresa Müller40
- William Durand38
- Yvan Le Bras38
- Armin Dadras37
- Pavankumar Videm35
- Gildas Le Corguillé32
- Beatriz Serrano-Solano28
- Marie Josse28
- Wolfgang Maier22
- Maria Doyle21
- Anup Kumar20
- Anne Fouilloux19
- Julia Jakiela18
- Nate Coraor18
- Khaled Jum'ah17
- Tristan Reynolds17
- Melanie Föll16
- Petros Kountouris16
- Subina Mehta16
- Pratik Jagtap15
- Deepti Varshney14
- Donny Vrins13
- Lucille Delisle13
- Marius van den Beek13
- Paul Zierep13
- Anton Nekrutenko12
- Bazante Sanders12
- Timothy J. Griffin12
- David López11
- Katarzyna Kamieniecka11
- Marisa Loach11
- Pablo Moreno11
- Simon Bray11
- Delphine Lariviere10
- Matthias Bernt10
- Daniela Schneider9
- Mélanie Petera9
- Peter van Heusden9
- Kaivan Kamali8
- Verena Moosmann8
- Amirhossein Naghsh Nilchi7
- Anna Syme7
- Florian Heyl7
- Katherine Do7
- Leonid Kostrykin7
- Morgan Howells7
- Simon Gladman7
- Alexandre Cormier6
- Dave Clements6
- Ekaterina Polkh6
- Hans-Rudolf Hotz6
- Mallory Freeberg6
- Melissa Burke6
- Alireza Khanteymoori5
- Diana Chiang Jurado5
- Stéphanie Robin5
- Bert Droesbeke4
- Clea Siguret4
- Coline Royaux4
- Fotis E. Psomopoulos4
- Sotiroula Chatzimatthaiou4
- Andrea Bagnacani3
- Clemens Blank3
- Eli Chadwick3
- Engy Nasr3
- Fabio Cumbo3
- Jennifer Hillman-Jackson3
- Joachim Wolff3
- Krzysztof Poterlowicz3
- Laura Leroi3
- Martijn Kersloot3
- Mateo Boudet3
- Mateusz Kuzak3
- Miaomiao Zhou3
- Paulo Cilas Morais Lyra Junior3
- Riccardo Massei3
- Sofoklis Keisaris3
- Xavier Garnier3
- Ahmed Hamid Awan2
- Alex Ostrovsky2
- Anika Erxleben2
- Arthur Barreau2
- Camila Goclowski2
- Carlos Chee Mendonça2
- Caterina Fuster-Barceló2
- Christine Oger2
- CicoZhang2
- Emma Barnes2
- Emma Leith2
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- Resource type
- e-learning313
- slides75
- Training materials18
- Lecture16
- Presentation16
- lessons8
- hands-on tutorial6
- course materials2
- Online material1
- Tutorial1
- online course1
- tutorial1
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- Related resource
- Associated Training Datasets251
- Associated Workflows231
- Jupyter Notebook (with Solutions)26
- Jupyter Notebook (without Solutions)26
- Quarto/RMarkdown Notebook3
- Data Visualisation (theory) 1
- R basics1
- compareMS21
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- Node
- Cyprus16
- Netherlands11
- Estonia8
- France2
- Sweden1
- Switzerland1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community5
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
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- Status
- Active28
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Competency level: Beginner

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