Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Assembly4
    • Biological sequences4
    • Community analysis4
    • Environmental microbiology4
    • Metagenomics4
    • Microbial ecology4
    • Microbiome4
    • Molecular community analysis4
    • Sequence analysis4
    • Sequence assembly4
    • Sequence databases4
    • Shotgun metagenomics4
    • Taxonomy4
    • Biodiversity2
    • Epidemiology2
    • Exomes2
    • Genome annotation2
    • Genomes2
    • Genomics2
    • Personal genomics2
    • Public health2
    • Public health and epidemiology2
    • Synthetic genomics2
    • Viral genomics2
    • Whole genomes2
    • Antimicrobial stewardship1
    • Comparative transcriptomics1
    • Computational ecology1
    • DNA metabarcoding1
    • DNA variation1
    • De novo genome sequencing1
    • Disease1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Genetic variation1
    • Genome sequencing1
    • Genomic variation1
    • Medical microbiology1
    • Metabarcoding1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Molecular infection biology1
    • Molecular microbiology1
    • Mutation1
    • Pathology1
    • Polymorphism1
    • RNA metabarcoding1
    • Somatic mutations1
    • Transcriptome1
    • Transcriptomics1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • fastp
    • Galaxy277
    • FastQC33
    • MultiQC23
    • SAMtools22
    • BEDTools16
    • scikit-learn16
    • BWA15
    • Data Stewardship Wizard14
    • Falco13
    • SCANPY13
    • DeepTools12
    • BLAST11
    • Cutadapt11
    • taxonomy_krona_chart10
    • GEMINI9
    • ggplot29
    • Bandage8
    • FASTX-Toolkit8
    • NanoPlot8
    • QUAST8
    • RStudio8
    • FreeBayes7
    • JBrowse7
    • RDMkit7
    • STAR7
    • Trimmomatic7
    • BamTools6
    • Trim Galore6
    • Biopython5
    • COPASI5
    • Flye5
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • Salmon5
    • Unicycler5
    • anndata5
    • kraken25
    • BUSCO4
    • Bowtie 24
    • Chipster4
    • DESeq24
    • Diamond4
    • European Nucleotide Archive (ENA)4
    • Galaxy Image Analysis4
    • HISAT24
    • KrakenTools4
    • MACS4
    • MaxQuant4
    • Ontology Lookup Service4
    • Workflow4Metabolomics4
    • annotatemyids4
    • bx-python4
    • mothur4
    • scikit-image4
    • seqtk4
    • snpEff4
    • BCFtools3
    • Bracken3
    • Bwa-mem23
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DropletUtils3
    • GOseq3
    • Galactic Circos3
    • GraPhlAn3
    • MAFFT3
    • MSstats3
    • Newick Utilities3
    • R3
    • RSeQC3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • Zooma3
    • export2graphlan3
    • humann3
    • msConvert3
    • xcms3
    • Bakta2
    • Bowtie2
    • BridgeDbR2
    • Cardinal2
    • CellProfiler2
    • ChIPpeakAnno2
    • Combine Metaphlan and HUMAnN2
    • FASTQE2
    • FastTree2
    • GECKO2
    • GOEnrichment2
    • GenomeScope 2.02
    • HUMAnN22
    • Heinz2
    • InterMine2
    • InterMineR2
    • InterProScan (EBI)2
    • JBrowse 22
    • MAGeCK2
    • MEME2
    • Medaka2
    • Show N_FILTERS more
    • Content provider
    • GTN12
    • Show N_FILTERS more
    • Keyword
    • Microbiome4
    • microgalaxy4
    • Assembly3
    • nanopore3
    • Introduction to Galaxy Analyses2
    • assembly2
    • biodiversity2
    • covid192
    • metabarcoding2
    • plants2
    • 16S1
    • Ecology1
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Transcriptomics1
    • Variant Analysis1
    • amplicon1
    • beer1
    • citizen science1
    • cyoa1
    • illumina1
    • metagenomics1
    • microbiome1
    • one-health1
    • polishing1
    • taxonomic abundance1
    • taxonomy1
    • virology1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Advanced2
    • Intermediate2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International12
    • Show N_FILTERS more
    • Target audience
    • Students12
    • Show N_FILTERS more
    • Author
    • Anton Nekrutenko3
    • Bérénice Batut3
    • Cristóbal Gallardo3
    • Daniel Blankenberg2
    • Dave Clements2
    • Marius van den Beek2
    • Anna Syme1
    • Bazante Sanders1
    • Engy Nasr1
    • John Beliveau1
    • Paul Zierep1
    • Polina Polunina1
    • Rand Zoabi1
    • Siyu Chen1
    • Teresa Müller1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann11
    • Helena Rasche9
    • Björn Grüning7
    • Bérénice Batut7
    • Cristóbal Gallardo7
    • Wolfgang Maier5
    • Deepti Varshney4
    • Anton Nekrutenko3
    • Nate Coraor3
    • Paul Zierep3
    • Teresa Müller3
    • Nicola Soranzo2
    • Anna Syme1
    • Anthony Bretaudeau1
    • Armin Dadras1
    • Bazante Sanders1
    • Beatriz Serrano-Solano1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • John Beliveau1
    • John Davis1
    • Lucille Delisle1
    • Marie Josse1
    • Mehmet Tekman1
    • Miaomiao Zhou1
    • Mélanie Petera1
    • Niall Beard1
    • Nuwan Goonasekera1
    • Siyu Chen1
    • Tristan Reynolds1
    • Verena Moosmann1
    • Willem de Koning1
    • William Durand1
    • Yvan Le Bras1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning10
    • slides2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets11
    • Associated Workflows11
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: fastp

and Competency level: Beginner

12 materials found
  • e-learning

    NGS data logistics

    • Beginner
    Introduction to Galaxy Analyses
  • slides

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    • Beginner
    Sequence assembly Assembly covid19
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.