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• • Scientific topic
  • Biodiversity34
  • Comparative transcriptomics34
  • Transcriptome34
  • Transcriptomics34
  • Exomes33
  • Genome annotation33
  • Genomes33
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  • Bayesian methods28
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  • Community analysis25
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  • Metagenomics23
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  • Assembly21
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  • Bottom-up proteomics18
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  • Taxonomy12
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  • DNA variation9
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  • De novo genome sequencing6
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  • Metabolites6
  • Metabolome6
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  • WGS6
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  • Algorithms5
  • Computer programming5
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• • Tool
  • Galaxy
  • FastQC33
  • MultiQC23
  • SAMtools22
  • BEDTools16
  • scikit-learn16
  • BWA15
  • Data Stewardship Wizard14
  • Falco13
  • SCANPY13
  • DeepTools12
  • fastp12
  • BLAST11
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  • taxonomy_krona_chart10
  • GEMINI9
  • ggplot29
  • Bandage8
  • FASTX-Toolkit8
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  • QUAST8
  • RStudio8
  • FreeBayes7
  • JBrowse7
  • RDMkit7
  • STAR7
  • Trimmomatic7
  • BamTools6
  • Trim Galore6
  • Biopython5
  • COPASI5
  • Flye5
  • MetaPhlAn5
  • Minimap25
  • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
  • Salmon5
  • Unicycler5
  • anndata5
  • kraken25
  • BUSCO4
  • Bowtie 24
  • Chipster4
  • DESeq24
  • Diamond4
  • European Nucleotide Archive (ENA)4
  • Galaxy Image Analysis4
  • HISAT24
  • KrakenTools4
  • MACS4
  • MaxQuant4
  • Ontology Lookup Service4
  • Workflow4Metabolomics4
  • annotatemyids4
  • bx-python4
  • mothur4
  • scikit-image4
  • seqtk4
  • snpEff4
  • BCFtools3
  • Bracken3
  • Bwa-mem23
  • Clustal 1.8 (Clustal W, Clustal X)3
  • DropletUtils3
  • GOseq3
  • Galactic Circos3
  • GraPhlAn3
  • MAFFT3
  • MSstats3
  • Newick Utilities3
  • R3
  • RSeQC3
  • SeqCode3
  • SortMeRNA3
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  • export2graphlan3
  • humann3
  • msConvert3
  • xcms3
  • Bakta2
  • Bowtie2
  • BridgeDbR2
  • Cardinal2
  • CellProfiler2
  • ChIPpeakAnno2
  • Combine Metaphlan and HUMAnN2
  • FASTQE2
  • FastTree2
  • GECKO2
  • GOEnrichment2
  • GenomeScope 2.02
  • HUMAnN22
  • Heinz2
  • InterMine2
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  • InterProScan (EBI)2
  • JBrowse 22
  • MAGeCK2
  • MEME2
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• • Content provider
  • GTN277
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• • Keyword
  • biodiversity34
  • microgalaxy31
  • Ecology29
  • Single Cell29
  • Statistics and machine learning28
  • Microbiome23
  • Transcriptomics20
  • Genome Annotation18
  • Proteomics18
  • Assembly17
  • Climate15
  • interactive-tools13
  • Epigenetics11
  • Introduction to Galaxy Analyses11
  • Sequence analysis11
  • earth-system11
  • prokaryote11
  • Using Galaxy and Managing your Data9
  • Variant Analysis9
  • plants9
  • work-in-progress9
  • label-free8
  • ocean8
  • EBV dataset7
  • EBV workflow7
  • assembly7
  • gmod7
  • jbrowse17
  • nanopore7
  • paper-replication7
  • DDA6
  • Imaging6
  • MIGHTS6
  • Metabolomics6
  • covid196
  • data management6
  • ecology6
  • español6
  • illumina6
  • metabarcoding6
  • transcriptomics6
  • bacteria5
  • deutsch5
  • italiano5
  • label-TMT115
  • metagenomics5
  • mouse5
  • 10x4
  • 16S4
  • Foundations of Data Science4
  • QC4
  • genetic composition EBV class4
  • pangeo4
  • ChIP-seq3
  • Digital Humanities3
  • Image segmentation3
  • Overlay3
  • RAD-seq3
  • amr3
  • climate3
  • collections3
  • cyoa3
  • data import3
  • deep-learning3
  • essential genes3
  • eukaryote3
  • gbif3
  • metatranscriptomics3
  • modeling3
  • one-health3
  • species populations EBV class3
  • taxonomic data3
  • Contributing to the Galaxy Training Material2
  • Conversion2
  • EML2
  • Evolution2
  • FAIR2
  • Galaxy Server administration2
  • Visualisation2
  • bulk2
  • community composition EBV class2
  • data cleaning2
  • data paper2
  • human2
  • jupyter-lab2
  • machine-learning2
  • maps2
  • marine omics2
  • metadata2
  • ncbi2
  • netcdf data2
  • rna-seq2
  • species population EBV class2
  • tnseq2
  • virology2
  • workflows2
  • 3D image1
  • AI segmentation1
  • Biodiversity1
  • Bioimaging1
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• • Competency level
  • Beginner
  • Intermediate77
  • Advanced8
  • Not specified1
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• • Licence
  • Creative Commons Attribution 4.0 International277
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• • Target audience
  • Students273
  • Galaxy Administrators2
  • Instructors2
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• • Author
  • Bérénice Batut44
  • Yvan Le Bras22
  • Saskia Hiltemann19
  • Subina Mehta17
  • Marie Josse14
  • Anne Fouilloux13
  • Mehmet Tekman13
  • Katherine Do12
  • Anton Nekrutenko11
  • Anup Kumar11
  • Helena Rasche11
  • Maria Doyle11
  • Pavankumar Videm11
  • Simon Gladman11
  • Björn Grüning10
  • Wendi Bacon10
  • Cristóbal Gallardo9
  • Delphine Lariviere9
  • James Johnson9
  • Kaivan Kamali8
  • Anthony Bretaudeau7
  • Julia Jakiela7
  • Nicola Soranzo7
  • Wolfgang Maier7
  • Anika Erxleben6
  • Anna Syme6
  • Coline Royaux6
  • Dave Clements6
  • Paul Zierep6
  • Valentin Loux6
  • Daniel Blankenberg5
  • Dechen Bhuming5
  • Erwan Corre5
  • Joachim Wolff5
  • Melanie Föll5
  • Pratik Jagtap5
  • Alexandre Cormier4
  • Alireza Khanteymoori4
  • Amirhossein Naghsh Nilchi4
  • Beatriz Serrano-Solano4
  • Clemens Blank4
  • Diana Chiang Jurado4
  • Florian Heyl4
  • Hélène Chiapello4
  • Katarzyna Kamieniecka4
  • Krzysztof Poterlowicz4
  • Laura Leroi4
  • Lucille Delisle4
  • Mallory Freeberg4
  • Stéphanie Robin4
  • Vivek Bhardwaj4
  • Alex Ostrovsky3
  • Bazante Sanders3
  • Belinda Phipson3
  • Daniela Schneider3
  • Emma Leith3
  • Engy Nasr3
  • Fidel Ramirez3
  • Gildas Le Corguillé3
  • Jeremy Goecks3
  • Junhao Qiu3
  • Khaled Jum'ah3
  • Leonid Kostrykin3
  • Marisa Loach3
  • Mo Heydarian3
  • Morgan Howells3
  • Mélanie Petera3
  • Paulo Cilas Morais Lyra Junior3
  • Polina Polunina3
  • Simon Bray3
  • Torsten Seemann3
  • Anne Pajon2
  • Chao Zhang2
  • David Christiany2
  • Deepti Varshney2
  • Ekaterina Polkh2
  • Elisa Michon2
  • Esteban Perez-Wohlfeil2
  • Florence Combes2
  • Florian Christoph Sigloch2
  • Fotis E. Psomopoulos2
  • Friederike Dündar2
  • Hans-Rudolf Hotz2
  • Harriet Dashnow2
  • Helge Hecht2
  • Jean-François Martin2
  • Jon Trow2
  • Khai Van Dang2
  • Leily Rabbani2
  • Lisanna Paladin2
  • Marius van den Beek2
  • Matthias Fahrner2
  • Miguel Roncoroni2
  • Nadia Goué2
  • Olivier Norvez2
  • Pauline Seguineau2
  • Praveen Kumar2
  • Rand Zoabi2
  • Ray Sajulga2
  • Riccardo Massei2
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• • Contributor
  • Saskia Hiltemann242
  • Helena Rasche200
  • Björn Grüning182
  • Bérénice Batut105
  • Nicola Soranzo62
  • Cristóbal Gallardo50
  • Niall Beard42
  • Anthony Bretaudeau39
  • Martin Čech39
  • Yvan Le Bras34
  • Mehmet Tekman33
  • Teresa Müller32
  • Armin Dadras31
  • Wendi Bacon31
  • Pavankumar Videm30
  • Gildas Le Corguillé29
  • William Durand28
  • Marie Josse27
  • Wolfgang Maier23
  • Nate Coraor20
  • Anup Kumar19
  • Maria Doyle19
  • Beatriz Serrano-Solano17
  • Anne Fouilloux16
  • Julia Jakiela14
  • Tristan Reynolds14
  • Deepti Varshney13
  • Melanie Föll13
  • Paul Zierep13
  • Pratik Jagtap13
  • Simon Bray12
  • Subina Mehta12
  • Timothy J. Griffin12
  • Pablo Moreno11
  • Lucille Delisle10
  • Marisa Loach10
  • Anton Nekrutenko9
  • Daniela Schneider9
  • Delphine Lariviere9
  • Matthias Bernt9
  • Kaivan Kamali8
  • Mélanie Petera8
  • Simon Gladman8
  • Verena Moosmann8
  • Amirhossein Naghsh Nilchi7
  • Anna Syme7
  • David López7
  • Katherine Do7
  • Florian Heyl6
  • Hans-Rudolf Hotz6
  • Marius van den Beek6
  • Morgan Howells6
  • Alireza Khanteymoori5
  • Diana Chiang Jurado5
  • Leonid Kostrykin5
  • Peter van Heusden5
  • Alexandre Cormier4
  • Bert Droesbeke4
  • Clea Siguret4
  • Coline Royaux4
  • Stéphanie Robin4
  • Bazante Sanders3
  • Clemens Blank3
  • Dave Clements3
  • Donny Vrins3
  • Ekaterina Polkh3
  • Engy Nasr3
  • Fabio Cumbo3
  • Joachim Wolff3
  • Katarzyna Kamieniecka3
  • Khaled Jum'ah3
  • Mallory Freeberg3
  • Mateo Boudet3
  • Mateusz Kuzak3
  • Miaomiao Zhou3
  • Paulo Cilas Morais Lyra Junior3
  • Riccardo Massei3
  • Alex Ostrovsky2
  • Anika Erxleben2
  • Arthur Barreau2
  • Carlos Chee Mendonça2
  • Christine Oger2
  • CicoZhang2
  • Enis Afgan2
  • Esteban Perez-Wohlfeil2
  • Fidel Ramirez2
  • Florence Combes2
  • Fotis E. Psomopoulos2
  • Graeme Tyson2
  • Igor Makunin2
  • Jennifer Hillman-Jackson2
  • Jonathan Manning2
  • Leily Rabbani2
  • Linelle Abueg2
  • Michael Thang2
  • Michelle Terese Savage2
  • Natalie Kucher2
  • Natalie Whitaker-Allen2
  • Pauline Seguineau2
  • Swathi Nataraj2
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• • Resource type
  • e-learning235
  • slides42
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• • Related resource
  • Associated Training Datasets231
  • Associated Workflows228
  • Jupyter Notebook (with Solutions)2
  • Jupyter Notebook (without Solutions)2
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• • Collection
  • ELIXIR Biodiversity Community5
  • ELIXIR hCNV community - collection of courses and materials.1
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