Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Assembly
    • Data management109
    • Metadata management109
    • Research data management (RDM)109
    • Algorithms88
    • Computer programming88
    • Data structures88
    • Programming languages88
    • Software development88
    • Software engineering88
    • FAIR data77
    • Findable, accessible, interoperable, reusable data77
    • Exomes46
    • Genome annotation46
    • Genomes46
    • Genomics46
    • Personal genomics46
    • Synthetic genomics46
    • Viral genomics46
    • Whole genomes46
    • Comparative transcriptomics44
    • Transcriptome44
    • Transcriptomics44
    • Biodiversity40
    • Biological sequences36
    • Sequence analysis36
    • Sequence databases36
    • Bayesian methods33
    • Biostatistics33
    • Descriptive statistics33
    • Gaussian processes33
    • Inferential statistics33
    • Markov processes33
    • Metagenomics33
    • Multivariate statistics33
    • Probabilistic graphical model33
    • Probability33
    • Shotgun metagenomics33
    • Statistics33
    • Statistics and probability33
    • Computational ecology30
    • Ecoinformatics30
    • Ecological informatics30
    • Ecology30
    • Ecosystem science30
    • Community analysis29
    • Environmental microbiology29
    • Microbial ecology29
    • Microbiome29
    • Molecular community analysis29
    • Bioinformatics28
    • Bottom-up proteomics24
    • Discovery proteomics24
    • MS-based targeted proteomics24
    • MS-based untargeted proteomics24
    • Metaproteomics24
    • Peptide identification24
    • Protein and peptide identification24
    • Proteomics24
    • Quantitative proteomics24
    • Targeted proteomics24
    • Top-down proteomics24
    • Sequence assembly23
    • Antimicrobial stewardship20
    • Medical microbiology20
    • Microbial genetics20
    • Microbial physiology20
    • Microbial surveillance20
    • Microbiological surveillance20
    • Microbiology20
    • Molecular infection biology20
    • Molecular microbiology20
    • Open science19
    • Cloud computing17
    • Computer science17
    • HPC17
    • High performance computing17
    • High-performance computing17
    • Taxonomy15
    • Diffraction experiment13
    • Epigenomics13
    • Imaging13
    • Microscopy13
    • Microscopy imaging13
    • Optical super resolution microscopy13
    • Photonic force microscopy13
    • Photonic microscopy13
    • Applied ontology12
    • DNA variation12
    • Genetic variation12
    • Genomic variation12
    • Mutation12
    • Ontologies12
    • Ontology12
    • Ontology and terminology12
    • Ontology relations12
    • Polymorphism12
    • Somatic mutations12
    • Terminology12
    • Upper ontology12
    • Show N_FILTERS more
    • Tool
    • Galaxy21
    • Bandage8
    • QUAST8
    • FastQC7
    • Flye5
    • NanoPlot5
    • BUSCO4
    • MultiQC4
    • Unicycler4
    • fastp4
    • BWA3
    • BamTools3
    • Minimap23
    • SAMtools3
    • BEDTools2
    • Bwa-mem22
    • GenomeScope 2.02
    • Medaka2
    • Merqury2
    • SPAdes2
    • VelvetOptimiser2
    • gfastats2
    • kraken22
    • pilon2
    • seqtk2
    • ABRicate1
    • BCFtools1
    • BLAST1
    • Bowtie 21
    • Circos1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • CoverM1
    • Cutadapt1
    • Diamond1
    • Falco1
    • FastTree1
    • Filtlong1
    • FreeBayes1
    • Galactic Circos1
    • KrakenTools1
    • MEGAHIT1
    • MLST1
    • NGSUtils1
    • Newick Utilities1
    • Polypolish1
    • Racon1
    • Smudgeplots1
    • Vcflib1
    • compute_sequence_length1
    • ggplot21
    • metaspades1
    • shovill1
    • snippy1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • GTN23
    • Show N_FILTERS more
    • Keyword
    • Assembly19
    • microgalaxy8
    • assembly6
    • biodiversity6
    • prokaryote5
    • nanopore4
    • jbrowse13
    • plants3
    • Microbiome2
    • Variant Analysis2
    • gmod2
    • illumina2
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • QC1
    • amr1
    • animals1
    • covid191
    • cyoa1
    • denovo1
    • genome1
    • genomics1
    • metagenomics1
    • polishing1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Intermediate11
    • Not specified2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International23
    • Show N_FILTERS more
    • Target audience
    • Students23
    • Show N_FILTERS more
    • Author
    • Simon Gladman7
    • Delphine Lariviere6
    • Anton Nekrutenko4
    • Bérénice Batut4
    • Anna Syme3
    • Alexandre Cormier2
    • Bazante Sanders2
    • Cristóbal Gallardo2
    • Helena Rasche2
    • Laura Leroi2
    • Paul Zierep2
    • Stéphanie Robin2
    • Alex Ostrovsky1
    • Anthony Bretaudeau1
    • Christophe Klopp1
    • Engy Nasr1
    • Erwan Corre1
    • Fabian Recktenwald1
    • Grace Hall1
    • Polina Polunina1
    • Saskia Hiltemann1
    • Solenne Correard1
    • Tom Brown1
    • Torsten Seemann1
    • Tristan Reynolds1
    • Vini Salazar1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann22
    • Helena Rasche19
    • Bérénice Batut18
    • Björn Grüning17
    • Cristóbal Gallardo13
    • Anthony Bretaudeau9
    • Niall Beard9
    • Nicola Soranzo9
    • Deepti Varshney6
    • William Durand6
    • Delphine Lariviere5
    • Anton Nekrutenko4
    • Maria Doyle4
    • Teresa Müller4
    • Tristan Reynolds4
    • Alexandre Cormier3
    • Anna Syme3
    • Gildas Le Corguillé3
    • Paul Zierep3
    • Simon Gladman3
    • Bazante Sanders2
    • Erwan Corre2
    • Laura Leroi2
    • Miaomiao Zhou2
    • Nate Coraor2
    • Solenne Correard2
    • Wolfgang Maier2
    • Alex Ostrovsky1
    • Anne Fouilloux1
    • Engy Nasr1
    • Enis Afgan1
    • Hans-Rudolf Hotz1
    • Jennifer Hillman-Jackson1
    • Matúš Kalaš1
    • Mélanie Petera1
    • Natalie Whitaker-Allen1
    • Peter van Heusden1
    • Polina Polunina1
    • Romane LIBOUBAN1
    • Saim Momin1
    • Stéphanie Robin1
    • Tom Brown1
    • Verena Moosmann1
    • Vijay1
    • Yvan Le Bras1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning16
    • slides7
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows21
    • Associated Training Datasets20
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Assembly

and Competency level: Beginner

23 materials found
  • slides

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    • Beginner
    Sequence assembly Assembly covid19
  • slides

    An Introduction to Genome Assembly

    • Beginner
    Sequence assembly Assembly
  • slides

    De Bruijn Graph Assembly

    • Beginner
    Sequence assembly Assembly
  • 1
  • 2
  • 3
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.