Training materials
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e-learning
16S Microbial Analysis with mothur (short)
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
e-learning
Clean and manage Sanger sequences from raw files to aligned consensus
• BeginnerSequence analysis Sequence analysis -
e-learning
Screening assembled genomes for contamination using NCBI FCS
• BeginnerSequence analysis Sequence analysis -
hands-on tutorial
Explore Protein Structures with ChimeraX
• BeginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
e-learning
Use V-pipe to evaluate SARS-CoV-2 sequence variability
• BeginnerVirology Sequence analysis SARS-CoV-2 Variant calling -
e-learning
NCBI BLAST+ against the MAdLand
• BeginnerSequence analysis Sequence analysis plants -
e-learning
Comparative gene analysis in unannotated genomes
• BeginnerGenomics Gene and protein families Sequence analysis Phylogeny Comparative genomics Genome Annotation annotation biodiversity cookbook eukaryote … -
e-learning
Microbial Variant Calling
• BeginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy … -
e-learning
Calling variants in non-diploid systems
• BeginnerGenetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote -
e-learning
Essential genes detection with Transposon insertion sequencing
• BeginnerGenomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq