TeSS (Training eSupport System)

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- Scientific topic
- Genomics
- Data management109
- Metadata management109
- Research data management (RDM)109
- Algorithms88
- Computer programming88
- Data structures88
- Programming languages88
- Software development88
- Software engineering88
- FAIR data77
- Findable, accessible, interoperable, reusable data77
- Exomes46
- Genome annotation46
- Genomes46
- Personal genomics46
- Synthetic genomics46
- Viral genomics46
- Whole genomes46
- Comparative transcriptomics44
- Transcriptome44
- Transcriptomics44
- Biodiversity40
- Biological sequences36
- Sequence analysis36
- Sequence databases36
- Bayesian methods33
- Biostatistics33
- Descriptive statistics33
- Gaussian processes33
- Inferential statistics33
- Markov processes33
- Metagenomics33
- Multivariate statistics33
- Probabilistic graphical model33
- Probability33
- Shotgun metagenomics33
- Statistics33
- Statistics and probability33
- Computational ecology30
- Ecoinformatics30
- Ecological informatics30
- Ecology30
- Ecosystem science30
- Community analysis29
- Environmental microbiology29
- Microbial ecology29
- Microbiome29
- Molecular community analysis29
- Bioinformatics28
- Bottom-up proteomics24
- Discovery proteomics24
- MS-based targeted proteomics24
- MS-based untargeted proteomics24
- Metaproteomics24
- Peptide identification24
- Protein and peptide identification24
- Proteomics24
- Quantitative proteomics24
- Targeted proteomics24
- Top-down proteomics24
- Assembly23
- Sequence assembly23
- Antimicrobial stewardship20
- Medical microbiology20
- Microbial genetics20
- Microbial physiology20
- Microbial surveillance20
- Microbiological surveillance20
- Microbiology20
- Molecular infection biology20
- Molecular microbiology20
- Open science19
- Cloud computing17
- Computer science17
- HPC17
- High performance computing17
- High-performance computing17
- Taxonomy15
- Diffraction experiment13
- Epigenomics13
- Imaging13
- Microscopy13
- Microscopy imaging13
- Optical super resolution microscopy13
- Photonic force microscopy13
- Photonic microscopy13
- Applied ontology12
- DNA variation12
- Genetic variation12
- Genomic variation12
- Mutation12
- Ontologies12
- Ontology12
- Ontology and terminology12
- Ontology relations12
- Polymorphism12
- Somatic mutations12
- Terminology12
- Upper ontology12
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- Operation
- Data handling1
- Database retrieval1
- File handling1
- File processing1
- Functional genome annotation1
- Genome annotation1
- Metagenome annotation1
- Processing1
- Query1
- Query and retrieval1
- Report handling1
- Sequence classification1
- Structural genome annotation1
- Utility operation1
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- Tool
- Galaxy33
- FastQC5
- JBrowse5
- Bandage4
- Diamond3
- Minimap23
- MultiQC3
- QUAST3
- BEDTools2
- BLAST2
- BUSCO2
- Bakta2
- Bowtie2
- Bracken2
- Bwa-mem22
- Clustal 1.8 (Clustal W, Clustal X)2
- Cutadapt2
- DeepTools2
- Falco2
- Flye2
- GECKO2
- GenomeScope 2.02
- MAGeCK2
- NanoPlot2
- Recentrifuge2
- TRANSIT2
- fastp2
- gfastats2
- tbl2gff32
- Apollo1
- BWA1
- BamTools1
- CheckM1
- Circos1
- Data Stewardship Wizard1
- FastTree1
- Filtlong1
- FreeBayes1
- Galactic Circos1
- ISEScan1
- Integron Finder1
- InterProScan (EBI)1
- MAFFT1
- Medaka1
- Merqury1
- NCBI Datasets1
- NCBI Resources1
- PASTEClassifier1
- PPanGGOLiN1
- PlasmidFinder1
- Polypolish1
- RAxML1
- RDMkit1
- RED1
- REPET1
- REXdb1
- Racon1
- RapidNJ1
- RepeatMasker1
- RepeatModeler1
- SAMtools1
- SRA1
- Smudgeplots1
- UCSC Genome Browser1
- Unicycler1
- Vcflib1
- ViralZone1
- antiSMASH1
- bx-python1
- chemfp1
- compute_sequence_length1
- dRep1
- eggNOG-mapper v21
- ggplot21
- kraken21
- orfipy1
- shovill1
- snippy1
- staramr1
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- Standard database or policy
- European Nucleotide Archive1
- FAIRsharing1
- RDA DMP Common Standard for Machine-Actionable Data Management Plans1
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- Content provider
- GTN35
- Centre for Genomic Regulation (CRG)1
- Cloud-SPAN1
- ELIXIR Norway1
- ELIXIR Slovenia1
- ELIXIR-SI eLearning Platform (EeLP)1
- EOSC4Cancer1
- IFB French Institute of Bioinformatics1
- SIB Swiss Institute of Bioinformatics1
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- Keyword
- Genome Annotation20
- microgalaxy17
- prokaryote11
- Assembly8
- biodiversity8
- gmod6
- bacteria5
- illumina5
- jbrowse15
- work-in-progress5
- assembly4
- Genomics3
- essential genes3
- eukaryote3
- plants3
- Cloud computing2
- Command line2
- Data analysis2
- EeLP2
- Evolution2
- HPC2
- Shell2
- Variant Analysis2
- amr2
- eLearning2
- genomics2
- nanopore2
- one-health2
- tnseq2
- Amazon Web Services1
- Annotation1
- Bioinformatics1
- CRISPR1
- ChIP-Seq1
- Data Analysis1
- Data Life Cycle1
- Data Management Plan1
- Data Steward1
- Data Stewardship Wizard1
- Data management planning1
- Data sharing1
- Docker1
- Ecology1
- FASTA1
- FASTQC1
- GTF1
- Galaxy1
- Genome browser1
- High performance computing1
- Microbiome1
- Oncology1
- Pangenome1
- Pipelines1
- QC1
- Quality Control1
- Research Data Management1
- Research Infrastructure1
- Sequence analysis1
- Transposons1
- Visualization1
- animals1
- annotation1
- apollo21
- bioinformatics1
- cell line1
- cookbook1
- evolution1
- genome1
- genome editing1
- open access1
- phylogenetics1
- plant science1
- polishing1
- training1
- vgp1
- virology1
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- Competency level
- Beginner
- Not specified138
- Intermediate13
- Advanced1
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- Licence
- Creative Commons Attribution 4.0 International40
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International3
- License Not Specified3
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- Target audience
- Students37
- Bioinformatician2
- Biologists2
- Graduate students2
- Life Science Researchers2
- PhD Students2
- Researchers2
- life scientists2
- Bioinformatician, Bioanalysts1
- Bioinformaticians1
- Biologists with little or no prior computational experience1
- Biologists, Genomicists, Computer Scientists1
- Clinical Scientists1
- Clinicians1
- Data Managers1
- Data Scientists1
- Data stewards1
- Life Scientists1
- Microbiologists1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- PhD candidates1
- PhD students in Genomics datascience1
- Post Docs1
- Post docs1
- Postgraduate students1
- Principal Investigators1
- Principal Investigators (PIs)1
- Public Health Professionals1
- Scientists1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- beginner bioinformaticians1
- data curators1
- genomics researchers1
- plant researchers1
- tool developers1
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- Author
- Bérénice Batut12
- Delphine Lariviere7
- Anna Syme4
- Anthony Bretaudeau4
- Anton Nekrutenko4
- Hélène Chiapello4
- Simon Gladman4
- Valentin Loux4
- Bazante Sanders3
- Torsten Seemann3
- Annabel Cansdale2
- Emma Rand2
- Esteban Perez-Wohlfeil2
- Evelyn Greeves2
- Helena Rasche2
- Jorge Buenabad-Chavez2
- Maria Doyle2
- Sarah Forrester2
- Alex Ostrovsky1
- Alexandre Cormier1
- Anika Erxleben1
- Björn Grüning1
- Christoph Stritt1
- Christophe Antoniewski1
- Clea Siguret1
- Cristóbal Gallardo1
- Daniela Brites1
- Didier Debroas1
- Erwan Corre1
- Espen Åberg1
- Fabian Recktenwald1
- Federico Bianchini1
- Galo A. Goig1
- Guillaume Gautreau1
- Illimar Rekand1
- Johann Confais1
- Jonathan Kreplak1
- Jordi Rambla1
- Juha Tornroos1
- Kenji Fujihara1
- Keywan Hassani-Pak1
- Klaas Vandepoele1
- Korbinian Bösl1
- Laura Leroi1
- Luca Cozzuto1
- Marc Christian Heuermann1
- Marko Petek1
- Mateo Boudet1
- Michiel Van Bel1
- Monique Zahn1
- Nadia Goué1
- Nathan Dunn1
- Nazeefa Fatima1
- Olivier Inizan1
- Patrick König1
- Paul Zierep1
- Pedro Barros1
- Raf Winand1
- Sabela de la Torre1
- Sander Thierens1
- Stéphanie Robin1
- Sylvia Mahara1
- Tom Brown1
- Toni Hermoso Pulido1
- Twishi Gulati1
- Uwe Scholz1
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- Contributor
- Saskia Hiltemann29
- Bérénice Batut24
- Helena Rasche24
- Björn Grüning21
- Anthony Bretaudeau17
- Cristóbal Gallardo7
- Niall Beard7
- Nicola Soranzo7
- Deepti Varshney6
- Delphine Lariviere5
- Teresa Müller5
- Tristan Reynolds5
- Anton Nekrutenko4
- Anna Syme3
- Bazante Sanders3
- Gildas Le Corguillé3
- Maria Doyle3
- Miaomiao Zhou3
- Paul Zierep3
- William Durand3
- Wolfgang Maier3
- Clea Siguret2
- Emma Barnes2
- Esteban Perez-Wohlfeil2
- James Chong2
- Nate Coraor2
- Peter van Heusden2
- Simon Gladman2
- Software Sustainability Institute2
- University of York2
- Verena Moosmann2
- pimarin2
- Alex Ostrovsky1
- Christoph Stritt1
- Christophe Antoniewski1
- Donny Vrins1
- Ekaterina Polkh1
- Enis Afgan1
- INRAE1
- Jennifer Hillman-Jackson1
- Jonathan Kreplak1
- Jordi Rambla1
- Juha Tornroos1
- Julia Ponomarenko1
- Laura Leroi1
- Matúš Kalaš1
- Mélanie Petera1
- Olivier Inizan1
- Sabela de la Torre1
- Saim Momin1
- Simon Bray1
- Solenne Correard1
- Stéphanie Robin1
- Tom Brown1
- Vijay1
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- Resource type
- e-learning31
- Training materials5
- slides5
- Slides3
- Video3
- course materials3
- Presentation2
- Tutorial2
- Bioinformatics1
- Course materials1
- Installation instructions1
- Manual1
- Online material1
- Recorded webinar1
- online course1
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- Related resource
- Associated Training Datasets33
- Associated Workflows29
- REPET image Docker1
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- Node
- Slovenia3
- Belgium2
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- Finland1
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- Status
- Active8
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Training materials

Scientific topics: Genomics

and Competency level: Beginner

46 materials found

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Training materials

Refining Genome Annotations with Apollo

Introduction to CRISPR screen analysis

Genome annotation with Prokka

galaxy.sciensano.be

How to install and deploy Beacon

ELIXIR TtR course: Basic genomics using advanced analysis tools