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Scientific topics: Assembly

and Tools: NanoPlot

and Competency level: Beginner

5 materials found

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e-learning

Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

• Beginner
Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
e-learning

Large genome assembly and polishing

• Beginner
Sequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing
e-learning

Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

• Beginner
Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy …
e-learning

Chloroplast genome assembly

• Beginner
Sequence assembly Assembly biodiversity jbrowse1 nanopore plants
slides

Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

• Beginner
Sequence assembly Assembly covid19