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Training materials

Competency level: Intermediate

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and Resource type: Tutorial

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DES RAP Book: Reproducible Discrete-Event Simulation in Python and R

•• Intermediate
Computer science Data visualisation Data management FAIR data Informatics Open science Statistics and probability Version control Workflows Automated testing …
Tutorial

EMO-BON Metagenomics: From Backend Integration to Frontend Processing

•• Intermediate
SPARQL fuseki Python
Tutorial

Glycoproteomics with FragPipe

•• Intermediate
Peptide database search Peptide identification glycomics glycoproteomics Mass spectrometry
Tutorial

Tutorial on using existing PerMedCoE Building Blocks and workflows

•• Intermediate
Bioinformatics Workflows Personalised medicine Building blocks
Tutorial, Presentation

Materials from 'Introduction to High Performance Computing for Life Scientists' course

•• Intermediate
Computational biology HPC GPU parallel computing
Tutorial

Tutorial on developing Building Blocks

•• Intermediate
Bioinformatics Workflows Personalised medicine HPC building blocks
Tutorial

Tutorial on working with computing clusters

•• Intermediate
HPC
Tutorial

Tutorial on using MPI with containers

•• Intermediate
MPI Containers Computer Programming Documentation and help
Tutorial

Tutorial on CARNIVAL

•• Intermediate
Molecular interactions, pathways and networks Gene expression Omics RNA-Seq Network analysis RNA-Seq analysis HPC Signaling RNAseq, transcriptomics
Tutorial

Tutorials on COBREXA

•• Intermediate
Personalised medicine Simulation experiment Modelling and simulation cell-level simulations Biomodelling HPC

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Training materials

DES RAP Book: Reproducible Discrete-Event Simulation in Python and R

EMO-BON Metagenomics: From Backend Integration to Frontend Processing

Glycoproteomics with FragPipe

Tutorial on using existing PerMedCoE Building Blocks and workflows

Materials from 'Introduction to High Performance Computing for Life Scientists' course

Tutorial on developing Building Blocks

Tutorial on working with computing clusters

Tutorial on using MPI with containers

Tutorial on CARNIVAL

Tutorials on COBREXA