Training materials
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e-learning
Optimizing DNA Sequences for Biological Functions using a DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook work-in-progress -
e-learning
Fine-tuning a LLM for DNA Sequence Classification
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
e-learning
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
e-learning
Generating Artificial Yeast DNA Sequences using a DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
scripts, examples
Using OpenCloning to automate the planning and documentation of cloning and genome engineering via python scripting
•• IntermediateSynthetic biology Metabolic engineering Molecular biology Genetic engineering Synthetic biology Genetic Engineering Molecular biology -
e-learning
Using BioImage.IO models for image analysis in Galaxy
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
e-learning
Genome annotation with Braker3
•• IntermediateGenomics Sequence assembly Biodiversity Zoology Plant biology Braker3 Genome Annotation biodiversity eukaryota jbrowse1 -
e-learning
Foundational Aspects of Machine Learning using Python
•• IntermediateStatistics and probability Statistics and machine learning ai-ml elixir jupyter-notebook -
e-learning
Neural networks using Python
•• IntermediateStatistics and probability Statistics and machine learning ai-ml elixir jupyter-notebook work-in-progress -
e-learning
Deep Learning (without Generative Artificial Intelligence) using Python
•• IntermediateStatistics and probability Statistics and machine learning ai-ml elixir jupyter-notebook work-in-progress