Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Antimicrobial stewardship1
    • Assembly1
    • Communicable disease1
    • DNA variation1
    • Epidemiology1
    • Exomes1
    • Genetic variation1
    • Genome annotation1
    • Genomes1
    • Genomic variation1
    • Genomics1
    • Infectious disease1
    • Medical microbiology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Molecular infection biology1
    • Molecular microbiology1
    • Mutation1
    • Personal genomics1
    • Polymorphism1
    • Public health1
    • Public health and epidemiology1
    • Sequence assembly1
    • Somatic mutations1
    • Synthetic genomics1
    • Transmissible disease1
    • Viral genomics1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • Jvarkit
    • Galaxy77
    • BUSCO7
    • JBrowse7
    • Galaxy Image Analysis6
    • scikit-image6
    • BWA5
    • QUAST4
    • SAMtools4
    • gffread4
    • ggplot24
    • BCFtools3
    • OMArk3
    • Open Babel3
    • RDKit3
    • SRA Software Toolkit3
    • STAR3
    • msConvert3
    • seqtk3
    • Apollo2
    • COMBAT-TB Workbench2
    • CellProfiler2
    • Cutadapt2
    • DISEASES2
    • Data Stewardship Wizard2
    • FastQC2
    • Galactic Circos2
    • HISAT22
    • Helixer2
    • MAFFT2
    • MaxQuant2
    • Merqury2
    • MultiQC2
    • QualiMap2
    • SCANPY2
    • The Protein Data Bank (PDB)2
    • Trimmomatic2
    • UniProt2
    • Workflow4Metabolomics2
    • compute_sequence_length2
    • dRep2
    • fastp2
    • iqtree2
    • metaQuantome2
    • snippy2
    • xcms2
    • AlphaFold 21
    • AutoDock Vina1
    • BEDTools1
    • BLAST1
    • Bakta1
    • BamTools1
    • BcForms1
    • Bio3D1
    • BioSimulations1
    • BioSimulators1
    • Biopython1
    • BpForms1
    • BridgeDb1
    • Bwa-mem21
    • CARNIVAL1
    • COBREXA.jl1
    • CONCOCT1
    • Cardinal1
    • CellNOptR1
    • ChEMBL1
    • CheckM1
    • ChemicalToolbox1
    • Circos1
    • Cytoscape1
    • DESeq21
    • Data Information System (DAISY)1
    • DeepTools1
    • EXTRACT1
    • European Nucleotide Archive (ENA)1
    • FEELnc1
    • Falco1
    • FastTree1
    • FeatureCounts1
    • FlashLFQ1
    • Flye1
    • Fpocket1
    • FreeBayes1
    • GAEVAL1
    • GOseq1
    • GenomeScope 2.01
    • Gromacs1
    • Identifiers.org1
    • InterMine1
    • InterMineR1
    • InterProScan (EBI)1
    • MALDIquant1
    • MDAnalysis1
    • MFAssignR1
    • MSFragger1
    • MSstats1
    • MSstatsTMT1
    • Matchms1
    • MaxBin1
    • MetaBAT 21
    • Show N_FILTERS more
    • Content provider
    • GTN1
    • Show N_FILTERS more
    • Keyword
    • Variant Analysis1
    • microgalaxy1
    • one-health1
    • prokaryote1
    • tuberculosis1
    • Show N_FILTERS more
    • Competency level
    • Intermediate
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International1
    • Show N_FILTERS more
    • Target audience
    • Students1
    • Show N_FILTERS more
    • Author
    • Peter van Heusden1
    • Simon Gladman1
    • Thoba Lose1
    • Show N_FILTERS more
    • Contributor
    • Anthony Bretaudeau1
    • Björn Grüning1
    • Bérénice Batut1
    • Cristóbal Gallardo1
    • Helena Rasche1
    • Linelle Abueg1
    • Mélanie Petera1
    • Peter van Heusden1
    • Saskia Hiltemann1
    • Tristan Reynolds1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets1
    • Associated Workflows1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Hide materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Jvarkit

and Competency level: Intermediate

and Include broken links: true

1 material found
  • e-learning

    M. tuberculosis Variant Analysis

    •• Intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.