Training materials
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e-learning
Content Tracking and Verification in Galaxy Workflows with ISCC-SUM
•• IntermediateImaging Data handling Data management Data sharing Imaging Validation -
e-learning
Execute a BiaPy workflow in Galaxy
•• IntermediateImaging 3D image Conversion Deep learning Image annotation Image segmentation Imaging Overlay Volume rendering -
e-learning
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools
•• IntermediateImaging Conversion Imaging Multi-channel image Object feature extraction ROI selection -
e-learning
Training Custom YOLO Models for Segmentation of Bioimages
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
e-learning
Voronoi segmentation
•• IntermediateImaging Image segmentation Imaging Multi-channel image Object counting Overlay Tessellation -
e-learning
Using BioImage.IO models for image analysis in Galaxy
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
e-learning
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
•• IntermediateImaging Data handling Data management Data sharing Imaging ROI selection -
e-learning
Tracking of mitochondria and capturing mitoflashes
•• IntermediateImaging Imaging Isolated object tracking Temporal analysis Time-lapse data -
e-learning
End-to-End Tissue Microarray Image Analysis with Galaxy-ME
•• IntermediateImaging Image segmentation Imaging Tissue imaging -
e-learning
Analyse HeLa fluorescence siRNA screen
•• IntermediateImaging Fluorescence microscopy High-throughput screening Image segmentation Image thresholding Imaging Object feature extraction Overlay
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