Training materials
Competency level: Intermediate
and Licence: Creative Commons Attribution 4.0 International
163 materials found
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e-learning
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome assembly binning metagenomics microgalaxy -
youtube video, Series of videos, slideck/ presentation, tutorials
7th Advanced in silico Drug Design workshop lectures
•• IntermediateDrug discovery Computational biology Computational chemistry Molecular modelling Molecular dynamics Pharmacology Proteins in silico drug design, Drug design, Drug discovery, Drug screening, pharmacophore, chemical biology, QSAR, Molecular docking, molecular modelling, PDBe, PDBe-KB, ChEMBL, De novo, deep learning, cheminformatics, AlphaFold, Quantum mechanics/molecular mechanics -
Video
Biodiversity Genomics Europe + SciLifeLab HiC Course
•• IntermediateHiC Genome Assembly Genome Sequencing Epigenomics Laboratory Technique -
e-learning
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools
•• IntermediateImaging Conversion Imaging Multi-channel image Object feature extraction ROI selection -
e-learning
Training Custom YOLO Models for Segmentation of Bioimages
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
hands-on tutorial, E-Learning
RNA-seq | From Counts 2 Biological Insights
•• IntermediateMolecular genetics Gene expression Transcriptomics RNA-Seq RNA-Seq bulk mouse Quality Control PCA Functional enrichment … -
e-learning
Comparison of two annotation tools - Helixer and Braker3
•• IntermediateGenomics Sequence assembly Braker3 Genome Annotation Helixer biodiversity eukaryota jbrowse1 -
lessons
Dashboards as showcases for FAIR collections
•• IntermediateFAIR data Biodiversity Bioinformatics Data visualisation Data curation and archival Database management FAIR Data Dashboard Data Management Online Repository -
e-learning
Annotate, prepare tests and publish Galaxy workflows in workflow registries
•• IntermediateFAIR Using Galaxy and Managing your Data workflows -
e-learning
Molecular formula assignment and mass recalibration with MFAssignR package
•• IntermediateMetabolomics Metabolomics