Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Biomedical informatics3
    • Clinical informatics3
    • Cloud computing3
    • Computer science3
    • Data management3
    • FAIR data3
    • Findable, accessible, interoperable, reusable data3
    • HPC3
    • Health and disease3
    • Health informatics3
    • Healthcare informatics3
    • High performance computing3
    • High-performance computing3
    • Medical informatics3
    • Metadata management3
    • Research data management (RDM)3
    • BioNLP1
    • Bioinformatics1
    • Biological modelling1
    • Biological models1
    • Biological networks1
    • Biological pathways1
    • Biological system modelling1
    • Botany1
    • Bottom-up proteomics1
    • Cellular process pathways1
    • Codon usage1
    • Community analysis1
    • Comparative transcriptomics1
    • DNA chips1
    • DNA microarrays1
    • Data mining1
    • Data rendering1
    • Data visualisation1
    • Discovery proteomics1
    • Disease pathways1
    • Environmental information processing pathways1
    • Environmental microbiology1
    • Evolution1
    • Evolutionary biology1
    • Expression1
    • Gene expression1
    • Gene expression profiling1
    • Gene regulatory networks1
    • Gene transcription1
    • Gene translation1
    • Genetic information processing pathways1
    • Interactions1
    • Interactome1
    • Literature mining1
    • MS-based targeted proteomics1
    • MS-based untargeted proteomics1
    • Metabolic pathways1
    • Metagenomics1
    • Metaproteomics1
    • MicroRNA sequencing1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Molecular genetics1
    • Molecular interactions1
    • Molecular interactions, pathways and networks1
    • NLP1
    • Natural language processing1
    • Networks1
    • Pathways1
    • Pattern recognition1
    • Peptide identification1
    • Plant1
    • Plant anatomy1
    • Plant biology1
    • Plant cell biology1
    • Plant ecology1
    • Plant genetics1
    • Plant physiology1
    • Plant science1
    • Plants1
    • Protein and peptide identification1
    • Protein interaction map1
    • Protein interaction networks1
    • Protein interactions1
    • Protein interactome1
    • Protein-DNA interaction1
    • Protein-DNA interactions1
    • Protein-RNA interaction1
    • Protein-RNA interactions1
    • Protein-ligand interactions1
    • Protein-nucleic acid interactions1
    • Protein-protein interactions1
    • Proteomics1
    • Quantitative proteomics1
    • RNA sequencing1
    • RNA-Seq1
    • RNA-Seq analysis1
    • Shotgun metagenomics1
    • Signal transduction pathways1
    • Signaling pathways1
    • Small RNA sequencing1
    • Small RNA-Seq1
    • Small-Seq1
    • Show N_FILTERS more
    • Operation
    • Data handling2
    • File handling2
    • File processing2
    • Processing2
    • Report handling2
    • Utility operation2
    • Data extraction1
    • Data retrieval1
    • Data retrieval (metadata)1
    • Database retrieval1
    • Metadata retrieval1
    • Quality control1
    • Query1
    • Query and retrieval1
    • Retrieval1
    • Validation1
    • Show N_FILTERS more
    • Tool
    • DISEASES2
    • Cytoscape1
    • DESeq21
    • EXTRACT1
    • InterMine1
    • InterMineR1
    • ORGANISMS1
    • STITCH1
    • STRING1
    • ggplot21
    • stringApp1
    • Show N_FILTERS more
    • Standard database or policy
    • STRING: functional protein association networks1
    • Search Tool for Interactions of Chemicals1
    • Show N_FILTERS more
    • Content provider
    • SIB Swiss Institute of Bioinformatics3
    • Novo Nordisk Foundation Center for Protein Research2
    • BioData.pt1
    • ELIXIR-SI eLearning Platform (EeLP)1
    • Fraunhofer FIT1
    • InterMine1
    • Pattern Institute1
    • SciLifeLab1
    • Show N_FILTERS more
    • Keyword
    • Clinical data3
    • FAIR3
    • Knowledge graph3
    • RDF3
    • GraphDB2
    • Python2
    • SPARQL2
    • Automation1
    • Data Visualization1
    • Data analysis1
    • Data integration1
    • Data management1
    • Data publishing1
    • Data validation1
    • Dataset template1
    • EeLP1
    • Epigenomics1
    • Evolutionary bioinformatics1
    • FAIRplus1
    • Functional enrichment1
    • Gene Ontology1
    • Genome Assembly1
    • Genome Sequencing1
    • HiC1
    • Laboratory Technique1
    • MIAPPE1
    • PCA1
    • Quality Control1
    • Query data1
    • R1
    • RDF graph generation1
    • RDF graph validation1
    • RNA-Seq1
    • SHACL1
    • Semantic Framework1
    • Semantic artifacts generation1
    • Systems biology1
    • Visualisation1
    • bulk1
    • data FAIRness1
    • eLearning1
    • fuseki1
    • life-sciences1
    • mouse1
    • orthology1
    • plant science1
    • service bundle1
    • Show N_FILTERS more
    • Competency level
    • Intermediate
    • Beginner17
    • Not specified3
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution Share Alike 4.0 International5
    • Creative Commons Attribution 4.0 International4
    • Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
    • License Not Specified1
    • MIT License1
    • Show N_FILTERS more
    • Target audience
    • Bioinformaticians
    • Students112
    • Academia/ Research Institution14
    • Industry14
    • Non-Profit Organisation14
    • Scientific community14
    • Researchers13
    • Healthcare11
    • Life scientists with programming skills7
    • Biologists6
    • bioinformaticians6
    • health professionals4
    • Data Managers4
    • Life Science Researchers4
    • PhD students4
    • Post Docs4
    • data stewards4
    • software developers, bioinformaticians4
    • Biomedical Researchers3
    • Computational biologists3
    • Data Scientists3
    • Health Care Professionals3
    • Research Scientists3
    • data managers3
    • rare disease patients representatives2
    • Academics2
    • Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
    • Galaxy Administrators2
    • General Physicians2
    • Genomics data science PhD students2
    • Graduate Students2
    • Graduate students2
    • Industry Professionals2
    • Life scientists2
    • Master students2
    • Patient Advocates 2
    • PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
    • PhD candidates2
    • Researcher in life sciences2
    • Researchers and bioinformaticians in other projects interested in depositiong data at the EGA2
    • biologists2
    • genomics researchers2
    • medical students2
    • modelers2
    • service administrators in organizations that want to make use of ELIXIR AAI 2
    • All postgraduates1
    • Analysts1
    • Bench biologists1
    • Bioinformatician1
    • Curators1
    • Database users1
    • Developers1
    • Developers wanting to distribute their MPI dependent software1
    • EIP members1
    • ELIXIR member1
    • ELIXIR members1
    • Graduates1
    • HPC system maintainers wanting to enable MPI containers1
    • Life science researchers who are new to high performance computing1
    • Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
    • Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research1
    • Postgraduate students1
    • Primary care doctors1
    • Research Software Engineers1
    • Support Staff1
    • Users wanting to construct MPI containers1
    • computational scientists1
    • data librarians1
    • healthcare professionals1
    • life science researchers1
    • physisians1
    • plant researchers1
    • post-docs1
    • project manager1
    • research software engineers and researchers developing research software1
    • software engineers1
    • statisticians1
    • Show N_FILTERS more
    • Author
    • Personalized Health Informatics Group3
    • Lars Juhl Jensen2
    • Andreas Pippow1
    • Ann-Kathrin Bernards1
    • Annunziata De Luisi1
    • Ave Tooming-Klunderud1
    • Brane Leskosek1
    • Brian Kilburn1
    • Carissa Robyn Bleker1
    • Carmela Gissi1
    • Cyril Pommier1
    • Dalmolin Systems Biology Group1
    • Daniel Arend1
    • Daniela Butano1
    • David Palecek1
    • Erwan Le Floch1
    • Eunkyong Choi1
    • Evangelos Pafilis1
    • Fernando Cruz Rodríguez1
    • Franziska Scallan1
    • Giada Ferrari1
    • Gos Micklem1
    • Graeme Oatley1
    • Guy Naamati1
    • Helen V. Cook1
    • Hugo Rodrigues1
    • Irene Fabiola Roman Maldonado1
    • Isabel Duarte1
    • Julie Sullivan1
    • Justin Clark-Casey1
    • Karine Labadie1
    • Kevin Herald Reierskog1
    • Keywan Hassani-Pak1
    • Klaas Vandepoele1
    • Kristina Gruden1
    • Laurie Bertrand1
    • Leonardo Girlanda1
    • Lily Shiue1
    • Lorenzo Ballini1
    • Maja Zagorščak1
    • Maria Gyftea1
    • Maria Laura Aguilera Gil1
    • Martin Zablocki1
    • Michiel Van Bel1
    • Morten Skage1
    • Nadezhda T. Doncheva1
    • Nadja Žlender1
    • Olga Vinnere Pettersson1
    • Pamela Veneziano Broccia1
    • Pedro Barros1
    • Petar Horki1
    • Philip Krauss1
    • Pierre Larmande1
    • Rachel Lyne1
    • Sebastian Beier1
    • Sergio Contrino1
    • Simona Buonanno1
    • Tuuli Lundback-Lärva1
    • Vasundra Touré1
    • Yo Yehudi1
    • Špela Baebler1
    • Show N_FILTERS more
    • Contributor
    • Sabine Österle2
    • Vasundra Touré2
    • Alejandra Delfin-Rossaro1
    • Alexandra Grebe de Baron1
    • Anne Cambon-Thomsen1
    • Carissa Robyn Bleker1
    • Cymon Cox1
    • Cyril Pommier1
    • Daniel Arend1
    • Dorothy Reilly1
    • Emmanuelle Rial-Sebbag1
    • Erwan Le Floch1
    • Gauthier Chassang1
    • Guy Naamati1
    • Hampus Pehrsson Ternström1
    • Herman van Vlijmen1
    • Hugo Rodrigues1
    • Ibrahim Emam1
    • Jacqueline Ullmann1
    • Jill Jaworski1
    • John "Scooter" Morris1
    • Keywan Hassani-Pak1
    • Klaas Vandepoele1
    • Kristen Schroeder1
    • Kristina Gruden1
    • Laurence Mabile1
    • Maja Zagorščak1
    • Manfred Kohler1
    • Manimozhiyan Arumugam1
    • Md. Rezaul Karim1
    • Michiel Van Bel1
    • Pedro Barros1
    • Phil Gribbon1
    • Philippe Rocca-Serra1
    • Pierre Larmande1
    • Robert Giessmann1
    • Sebastian Beier1
    • [email protected]1
    • Špela Baebler1
    • Show N_FILTERS more
    • Resource type
    • Video4
    • Documentation2
    • E-Learning2
    • E-learning2
    • Training materials2
    • Course materials1
    • Mock data1
    • Online material1
    • Tutorial1
    • e-learning1
    • hands-on tutorial1
    • online course1
    • Show N_FILTERS more
    • Related resource
    • ARROWSMITH1
    • RNA-seq data package1
    • Show N_FILTERS more
    • Node
    • Switzerland3
    • Denmark2
    • France1
    • Portugal1
    • Slovenia1
    • Sweden1
    • United Kingdom1
    • Show N_FILTERS more
    • Status
    • Active9
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Competency level: Intermediate

and Target audience: Bioinformaticians

12 materials found
  • Text-mining exercises

    ELIXIR node event
    •• Intermediate
    Microbial ecology Metagenomics Natural language processing Data mining
  • Cytoscape stringApp exercises

    ELIXIR node event
    •• Intermediate
    Bioinformatics Molecular interactions, pathways and networks Protein interactions Proteomics Data visualisation
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.