TeSS (Training eSupport System)

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- Scientific topic
- Genome annotation170
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- Anyone interested in bioinformatics1
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- The course is aimed at research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff, as well as specialists in related fields.1
- This webinar is aimed at scientists with an interest in learning more about the Europe PMC and optimising their literature searches.1
- This workshop is aimed at PhD students within the PhD programme "Genetics, Molecular and Cellular Biology" (University of Pavia) and the PhD programmme "Biomolecular Sciences and Biotechnology" (IUSS, University School for Advanced Studies Pavia.1
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- Author
- Martin Morgan97
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- SIB Swiss Institute of Bioinformatics42
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- Teaching materials at the Harvard Chan Bioinformatics Core25
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- UC Davis Bioinformatics Core Training Page18
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- Bioinformatics, Rockefeller University7
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- Input datasets34
- Research Data Management in Life Sciences11
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- Development in Galaxy slides6
- Proteomics dataset5
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- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- ChIP-Seq data analysis dataset2
- Epigenetics dataset2
- Galaxy Server administration slides2
- Genome Annotation dataset2
- Metagenomics dataset2
- Sequence analysis slides2
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- COBRA Toolbox1
- Contributing to the Galaxy Training Material slides1
- DMPortal1
- Data Stewardship Wizard1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- ELIXIR's Impact Toolkit1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genome Annotation slides1
- Genomics England PanelApp1
- Introduction to Galaxy Analyses dataset1
- Introduction to Galaxy dataset1
- Introduction to the EGA and sharing sensitive data1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- Statistics dataset1
- Transcriptomics slides1
- User Interface and Features dataset1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
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- PHENotyping and EnviroTyping (PHENET training collection)19
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- RDMbites: Data management essentials8
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- PINK project6
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- VEIS - Value of the EGA for Industry and Society4
- Elements of Data Management2
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Training materials

Ecology Workshop Overview

ChIP-Seq data analysis - Identification of the binding sites of the Estrogen receptor

Assembly - Unicycler Assembly

Introduction to Galaxy - Extracting Workflows from Histories

Introduction to Galaxy Analyses - Introduction to Genomics and Galaxy

Transcriptomics - Visualization of RNA-Seq results with CummeRbund

Proteomics - Peptide and Protein ID using OpenMS tools

Instructor notes

PacBio de novo genome assembly - Hands on exercise

Genome assembly with long reads