TeSS (Training eSupport System)

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- Scientific topic
- Genome annotation170
- MicroRNA sequencing161
- RNA sequencing161
- RNA-Seq161
- RNA-Seq analysis161
- Small RNA sequencing161
- Small RNA-Seq161
- Small-Seq161
- Transcriptome profiling161
- WTSS161
- Whole transcriptome shotgun sequencing161
- miRNA-seq161
- R152
- R program152
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- Exomes148
- Genomes148
- Genomics148
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- Synthetic genomics148
- Viral genomics148
- Whole genomes148
- Comparative transcriptomics138
- Transcriptome138
- Transcriptomics138
- High-throughput sequencing112
- Chromosome walking111
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- DNA-Seq111
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- NGS111
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- Next generation sequencing111
- Panels111
- Primer walking111
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- Data management109
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- Research data management (RDM)109
- Bayesian methods94
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- Active learning79
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- Python72
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- Single-cell genomics61
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- FAIR data58
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- Data rendering49
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- Metagenomics39
- Shotgun metagenomics39
- Breakend assembly38
- Genome assembly38
- Genomic assembly38
- Pipelines38
- Sequence assembly (genome assembly)38
- Software integration38
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- Tool interoperability38
- Variant pattern analysis38
- Workflows38
- Antimicrobial stewardship33
- Functional genome annotation33
- Medical microbiology33
- Metagenome annotation33
- Microbial genetics33
- Microbial physiology33
- Microbial surveillance33
- Microbiological surveillance33
- Microbiology33
- Molecular infection biology33
- Molecular microbiology33
- Structural genome annotation33
- Bioinformatics32
- Bottom-up proteomics29
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- Operation
- Annotation9
- Data visualisation6
- Molecular visualisation6
- Plotting6
- Rendering6
- Visualisation6
- Functional enrichment analysis4
- GSEA4
- Gene set analysis4
- Gene-set enrichment analysis4
- Gene-set over-represenation analysis4
- Methylation analysis4
- Methylation profile analysis4
- Allele calling3
- Exome variant detection3
- Genome variant detection3
- Germ line variant calling3
- Mutation detection3
- Somatic variant calling3
- Variant calling3
- Variant mapping3
- de novo mutation detection3
- Data brokering1
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- Tool
- Bioconductor241
- REDCap19
- BridgeDb3
- MGnify (was EBI Metagenomics)3
- Data Stewardship Wizard2
- RDMkit2
- BridgeDbR1
- CARNIVAL1
- CDK Depict1
- CellNOptR1
- Cufflinks1
- Cytoscape1
- EDAM-Browser1
- Galaxy1
- HumanMine1
- MGnify1
- MouseMine1
- OMERO1
- Ontology Lookup Service1
- RCy31
- TargetMine1
- WikiPathways1
- Wikidata1
- bio.tools1
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- Standard database or policy
- NCBI Gene4
- Bioconductor3
- DisProt2
- Ensembl2
- BRENDA1
- BridgeDb1
- FAIRsharing1
- Gene3D1
- Genomics England | PanelApp1
- HumanMine1
- Integrated resource of protein families, domains and functional sites1
- Observational Medical Outcomes Partnership Standard Vocabulary1
- PRINTS1
- RDA DMP Common Standard for Machine-Actionable Data Management Plans1
- SUPERFAMILY1
- Stress Knowledge Map1
- Structural Classification Of Proteins1
- The FAIR Principles1
- The Observational Medical Outcomes Partnership Common Data Model1
- WorkflowHub1
- i2b2-patient_visit_dimensions1
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- Content provider
- Glittr.org826
- European Bioinformatics Institute (EBI)484
- Bioconductor242
- GTN148
- IFB French Institute of Bioinformatics131
- ERGA Knowledge Hub128
- GOBLET110
- Australian BioCommons88
- Bioinformatics Visualization72
- Software Carpentry70
- ELXIR-UK DaSH62
- NGS Registry60
- Data Carpentry34
- de.NBI33
- Khan Academy Statistics32
- BY-COVID31
- VIB Bioinformatics Core29
- Canadian Bioinformatics Workshops26
- Bioinformatics and Biomathematics Training Hub25
- Coding for Reproducible Research (CfRR)19
- Coursera19
- VBCF BioComp19
- SIB Swiss Institute of Bioinformatics12
- VHP4Safety10
- Bioschemas9
- ELIXIR8
- Genome 3D8
- DTLS - Dutch Techcentre For Life Sciences7
- Data Steward team Ghent University6
- VIB Training & Conferences6
- eNanoMapper6
- InterMine5
- LIPID MAPS5
- ELIXIR Slovenia4
- Proteomics Academy4
- BioData.pt3
- Centre for Genomic Regulation (CRG)3
- ELIXIR Norway3
- NanoCommons3
- Barcelona Supercomputing Center (BSC)2
- CSC - IT Center for Science2
- DeiC – Danish e-Infrastructure Cooperation2
- Department of Bioinformatics - BiGCaT, Maastricht University2
- ELIXIR Estonia2
- ELIXIR: The Czech Republic Node2
- NBIS2
- Biomedical Sciences Research Center "Alexander Fleming"1
- CNAG-CRG1
- Centre for Digital Life Norway1
- Danish National Health Data Science Sandbox1
- ExCALIBUR1
- NYU Langone Health1
- Open Science MOOC1
- PerMedCoE1
- The Carpentries1
- UNIVERSE-HPC project1
- proteomicsML1
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- Keyword
- R319
- Genomics158
- Python132
- Transcriptomics126
- RNA-seq125
- Next generation sequencing119
- Bioinformatics83
- Data management83
- Statistics78
- Data science67
- Machine learning66
- Single-cell sequencing61
- Unix/Linux60
- Reproducibility59
- FAIR data56
- Variant analysis50
- Data visualization49
- Version control48
- Workflows47
- Genome assembly41
- Galaxy38
- General36
- Genome annotation36
- Metagenomics35
- QC29
- metagenomics29
- FAIR28
- Genome28
- Molecular28
- Alignment27
- Nextflow27
- biohackaton 201827
- Long read sequencing26
- data management24
- Docker23
- Containerization22
- Microbiology22
- Shiny22
- Annotation21
- Phylogenetics21
- Spatial transcriptomics21
- BAM20
- RDM20
- sensitive data19
- CfRR19
- ChIP-seq19
- Differential-expression19
- FASTQ19
- High performance computing19
- Pre-processing19
- REDCap19
- RNA-Seq19
- life-sciences19
- programming19
- reproducible research19
- scientific computing19
- Artificial intelligence18
- Comparative genomics18
- R-programming16
- Cloud computing15
- Anatomy Physiology and Atlases14
- Earlham Institute14
- Julia14
- NGS14
- Quarto14
- Statistical-model14
- ATAC-seq13
- Enrichment analysis13
- Epigenetics13
- Exploratory-analysis13
- Image analysis13
- Pathways and Networks13
- Proteomics13
- Shell13
- bioinformatics13
- metadata13
- Europe PMC12
- Introduction12
- Pathway12
- Rmarkdown12
- health-informatics12
- Analysis11
- Cells and Organisms11
- ChIP-Seq11
- Expression-estimation11
- Introduction bioinformatics11
- Multiomics11
- Programming11
- plant phenotyping11
- Extras10
- FAIRsharing10
- Feature-summarisation10
- Literature search10
- Singularity10
- Snakemake10
- databases10
- Deep learning9
- Epidemiology9
- Git9
- Intro9
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- Competency level
- Not specified
- Beginner954
- Intermediate283
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- Licence
- License Not Specified2320
- Creative Commons Attribution 4.0 International357
- MIT License108
- Creative Commons Attribution Share Alike 4.0 International87
- GNU General Public License v3.0 only44
- Creative Commons Zero v1.0 Universal35
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International31
- BSD 3-Clause "New" or "Revised" License14
- Apache License 2.012
- Creative Commons Attribution Non Commercial Share Alike 4.0 International10
- Creative Commons Attribution Non Commercial 4.0 International6
- CeCILL Free Software License Agreement v2.13
- Other (Non-Commercial)3
- Other (Not Open)3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- Creative Commons Attribution 2.0 Generic1
- Do What The F*ck You Want To Public License1
- The Unlicense1
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- Target audience
- Researchers172
- Biologists, Genomicists, Computer Scientists167
- PhD students162
- Post-Doctoral Fellows161
- Clinicians119
- Graduate students83
- Graduate Students78
- Life Science Researchers49
- Novice44
- post-docs42
- Intermediate26
- Students24
- beginner bioinformaticians22
- Biologists14
- bioinformaticians14
- Beginners13
- life scientists13
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- Trainers10
- biocurators8
- PhD5
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- General Interest4
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- data stewards3
- postdoc3
- software developers, bioinformaticians3
- teachers3
- Clinical Scientists2
- Master students2
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- Scientists2
- Toxicologists2
- Training Coordinators2
- Training Organisers2
- Undergraduate students2
- biology and bioinformatics sophomore undergraduates2
- plant researchers2
- postdocs2
- Anyone interested in bioinformatics1
- Anyone wants to start using the Unix/Linux OS1
- Anyone who wants to become a good trainer or teacher1
- Bachelor students1
- Beginner informatics1
- Bioinformatics1
- Biomedical researchers1
- DMP writers1
- Data Access Committeses from the EGA1
- Data Scientists1
- ELIXIR members1
- Early Career Researcher1
- Educators1
- Grad students1
- High School Students1
- Lecturers1
- Life sciences1
- Ontologists1
- PhD Students1
- PhD candidates1
- Postdoctoral researchers1
- Professors1
- Prospective and existing trainers1
- Researcher in life sciences1
- Researchers 1
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA1
- Researchers and bioinformaticians involved in the VEIS project1
- Researchers in Life Sciences1
- Scientific community1
- Structural Biologists1
- Technicians1
- The course is aimed at research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff, as well as specialists in related fields.1
- This webinar is aimed at scientists with an interest in learning more about the Europe PMC and optimising their literature searches.1
- This workshop is aimed at PhD students within the PhD programme "Genetics, Molecular and Cellular Biology" (University of Pavia) and the PhD programmme "Biomolecular Sciences and Biotechnology" (IUSS, University School for Advanced Studies Pavia.1
- University and College Level Students1
- Users1
- Wet-lab researchers and bioinformaticians who want to access scientific literature and data programmatically.1
- clinicians and informaticians interested in cancer genetics1
- computational scientists1
- data managers1
- early stage phytopathogen researchers1
- experimeintal biologist researchers1
- field biologist researchers1
- geneticists1
- healthcare professionals1
- high school1
- life science researchers1
- master1
- postdoctoral researchers1
- principle investigators1
- programmers1
- research software engineers and researchers writing code1
- systems biologists1
- web developers1
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- Author
- Martin Morgan97
- The Carpentries Incubator52
- SIB Swiss Institute of Bioinformatics42
- bioinformatics.ca35
- bebatut32
- bgruening32
- Teaching materials at the Harvard Chan Bioinformatics Core25
- Michelle Brazas21
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- Coding for Reproducible Research Initiative19
- Saskia Lawson-Tovey19
- The Gulbenkian Training Programme in Bioinformatics19
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
- András Aszódi17
- Data Carpentry17
- posit::conf(2024)17
- shiltemann17
- Samaha, Georgina15
- nekrut14
- CRUK CI Bioinformatics Core13
- Jenny Drnevich @jenny12
- Laura Cooper11
- Mathieu Bourgey11
- Various11
- Canadian Bioinformatics Workshops10
- Fred Hutch Data Science Lab10
- Paul Yorke10
- Bérénice Batut9
- David Wishart9
- ELIXIR Estonia9
- Jared Simpson9
- allegra.via Via9
- rstudio::conf(2022)9
- Bastian Schiffthaler @bastian8
- Boris Steipe8
- Egon Willighagen8
- Malachi Griffith8
- Nicolas Delhomme @delhomme8
- Sundeep Agarwal8
- pajanne8
- Biocore@CRG7
- Bioinformatics, Rockefeller University7
- Maria Levchenko7
- Saskia Hiltemann7
- Sergio Martínez Cuesta7
- Vincent Carey7
- Wolfgang Huber7
- joachimwolff7
- nsoranzo7
- stortebecker7
- Andrew Mason6
- Anna Poetsch6
- BU-ISCIII6
- Beecroft, Sarah6
- Bernardo Clavijo6
- Deshpande, Nandan6
- JuliaAcademy6
- Levi Waldron6
- Michael Lawrence6
- Michael Love6
- Richard Smith-Unna6
- Simon Anders6
- Software Carpentry6
- VIB Training & Conferences6
- Williams, Sarah6
- erasche6
- erxleben6
- jmchilton6
- slugger706
- tnabtaf6
- Aidan Budd5
- Alexander Botzki5
- Brian Haas5
- Dayane Araujo5
- ELIXIR Europe Training5
- Eija Korpelainen5
- Emma Karoune5
- Fouad Yousif5
- Gary Bader5
- Guillaume Bourque5
- Gustafsson, Johan5
- Hadley Wickham5
- Health Data Science Sandbox5
- Jessica Kirkpatrick [email protected]5
- Laurent Gatto5
- Lori Shepherd5
- Manuel Corpas5
- MolSSI Education5
- Patricia Palagi5
- Radhika Khetani @radhika5
- Robin Haw5
- Sonali Arora5
- The Carpentries Lab5
- Willet, Cali5
- blankclemens5
- cambiotraining5
- jhudsl5
- yvanlebras5
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- Contributor
- Toby Hodges77
- François Michonneau68
- Erin Becker62
- Zhian N. Kamvar58
- Mine Cetinkaya-Rundel56
- Katrin Leinweber53
- Tracy Teal53
- Raniere Silva52
- W. Trevor King51
- Andy Boughton50
- Robert Andrews50
- maneesha50
- Katie Anne Mills48
- Maxim Belkin47
- Canadian Bioinformatics Workshops43
- David Pérez-Suárez43
- Gabriel A. Devenyi43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Greg Wilson41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Munazah Andrabi38
- Rémi Emonet38
- William L. Close38
- Rayna M Harris37
- Sarah Brown35
- Gerard Capes33
- trk31
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Alex Whan27
- Christina K.26
- Paula Andrea Martinez26
- Renato Alves26
- Michael Joseph25
- Anthony Gitter24
- João Rodrigues24
- Geert van Geest22
- Sarah Stevens21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- Robert Davey20
- The Gulbenkian Training Programme in Bioinformatics19
- Paola Prieto18
- C. Titus Brown17
- Aaron O'Leary16
- Bérénice Batut16
- Will Gammerdinger16
- Annajiat Alim Rasel15
- Hannah Lyman15
- John Blischak15
- Mark Fernandes15
- Meeta Mistry15
- Radhika Khetani15
- Trevor Bekolay15
- Benson Muite14
- Bianca Peterson14
- Candace Savonen14
- Mateusz Kuzak14
- Carrie Wright13
- Lex Nederbragt13
- Wolmar Nyberg Åkerström13
- jhudsl-robot13
- zhibinlu13
- Karen Word12
- Laurent Gatto12
- Ethan White11
- Hugo Tavares11
- JCSzamosi11
- Jihe Liu11
- Karen Cranston11
- Kate Isaac11
- Kilian Lieret11
- Miguel Cardoso11
- Niclas Jareborg11
- Pete Bachant11
- Radovan Bast11
- Saskia Hiltemann11
- Stéphane Guillou11
- Wandrille D.11
- Yihui Xie11
- Ariel Rokem10
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- Resource type
- Recorded webinar300
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- e-learning125
- Tutorial93
- Talk53
- Course materials49
- tutorial45
- slides43
- Webinar33
- video31
- Slides30
- exercise26
- Presentation16
- Poster14
- Slideshow12
- Training materials12
- hands-on tutorial9
- PDF7
- course materials7
- lessons7
- How-to guide2
- Life Sciences Literature Database2
- Scripts2
- Slidedeck2
- podcast2
- presentation2
- Series of videos1
- Book1
- Documentation1
- E-Learning1
- E-learning + workshop1
- Notes1
- Tool1
- additional reading1
- case studies1
- didactic activities1
- e-Learning1
- handbook1
- implementation guidelines1
- knowledgebase1
- online modules1
- tutorials1
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- Related resource
- Input datasets34
- Research Data Management in Life Sciences11
- Associated slides9
- Development in Galaxy slides6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- ChIP-Seq data analysis dataset2
- Epigenetics dataset2
- Galaxy Server administration slides2
- Genome Annotation dataset2
- Metagenomics dataset2
- Sequence analysis slides2
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- COBRA Toolbox1
- Contributing to the Galaxy Training Material slides1
- DMPortal1
- Data Stewardship Wizard1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- ELIXIR's Impact Toolkit1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genome Annotation slides1
- Genomics England PanelApp1
- Introduction to Galaxy Analyses dataset1
- Introduction to Galaxy dataset1
- Introduction to the EGA and sharing sensitive data1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- Statistics dataset1
- Transcriptomics slides1
- User Interface and Features dataset1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
- Video of the course1
- elabFTW1
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- Node
- Switzerland998
- EMBL-EBI485
- United Kingdom161
- France133
- Belgium42
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- Netherlands25
- Czech Republic17
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- Finland4
- Norway4
- Sweden4
- Italy3
- Portugal3
- Denmark2
- Estonia2
- Luxembourg2
- Greece1
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- Collection
- PHENotyping and EnviroTyping (PHENET training collection)19
- RDMbites: REDCap18
- RDMbites: Image data11
- RDMbites: Sequencing data9
- RDMbites: Data management essentials8
- ELIXIR Federated Human Data Community6
- PINK project6
- ELIXIR Biodiversity Community5
- ELIXIR Systems Biology Community: training events and materials5
- ELIXIR Toxicology Community5
- RDMbites: Sensitive data5
- ELIXIR SIS-Containers - collection of training materials4
- RDMbites: Equality, Diversity, Inclusion and Justice in RDM4
- VEIS - Value of the EGA for Industry and Society4
- Elements of Data Management2
- Single-cell Omics Community - collection of courses and materials2
- Byte-sized RSE series1
- Impact of research infrastructures1
- VIP138 SLOT Online Terbaik saat ini di Indonesia1
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- Under development3
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Training materials

Training on Galaxy : Metagenomics

HOVERGEN tutorial

Exploring microbiomes with the MicroScope Platform

Initiation to Galaxy

IFB Cloud tutorial: Gene regulation

REPET: TEdannot Tutorial

Chip Seq: Annotation and visualization Tutorial

Transcriptome de novo assembly

Docker Tutorial

Visualization of NGS data with IGV