Training materials
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ELIXIR TeSS
RNA-seq module Bert Overduin
RNA-Seq RNA-Seq Pre-processing QC Alignment
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ELIXIR TeSS
Nicolas Delhomme and Bastian Schiffthaler
RNA-Seq FASTQ GFF3 BAM Populus-tremula RNA-Seq Pre-processing QC Alignment Annotation …
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ELIXIR TeSS
Expression estimation
RNA-Seq GFF3 BAM Populus-tremula RNA-Seq Expression-estimation
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ELIXIR TeSS
Example “Variant Calling”
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ELIXIR TeSS
Mapping Quality Control
Alignment BAM QC
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ELIXIR TeSS
Day 3 - RNA-Seq Analysis
QC Exploratory-analysis Differential-expression Statistical-model Pre-processing
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ELIXIR TeSS
RNA-Seq
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ELIXIR TeSS
ChIP-Seq
ChIP-Seq Experimental-design QC ChIP-Seq-QC Data-format Alignment Peak-calling Differential-binding Annotation
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ELIXIR TeSS
Tutorial
RNA-Seq FASTQ GFF3 BAM Populus-tremula RNA-Seq Pre-processing QC Alignment Annotation …
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ELIXIR TeSS
Prerequisite
Statistics and probability Unix Linux R-programming Statistics