Materials - TeSS (Training eSupport System)

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- Algorithms107
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- Bottom-up proteomics42
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- Galaxy363
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- ggplot212
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- FASTX-Toolkit8
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- BCFtools7
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- HISAT27
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- Minimap26
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- gffread6
- DESeq25
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- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
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- CellProfiler4
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- bx-python4
- mothur4
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- Apollo3
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- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
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- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- Ontology Lookup Service3
- QualiMap3
- RDKit3
- SEEK3
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- UCSC Genome Browser Utilities3
- Vcflib3
- bed to protein map3
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- FAIRsharing4
- RDA DMP Common Standard for Machine-Actionable Data Management Plans4
- European Nucleotide Archive3
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- Bioschemas1
- Cellosaurus1
- Common Workflow Language1
- FAIRtracks1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- Minimum Information about Plant Phenotyping Experiment1
- ModelArchive1
- Research Object Crate1
- Resource Identification Portal 1
- Schema.org1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
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- data.eNanoMapper.net1
- eNanoMapper Ontology1
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- GTN707
- Australian BioCommons86
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- ELXIR-UK DaSH54
- ERGA Knowledge Hub49
- DTLS - Dutch Techcentre For Life Sciences33
- Canadian Bioinformatics Workshops26
- Coding for Reproducible Research (CfRR)19
- ELIXIR Portugal16
- SIB Swiss Institute of Bioinformatics15
- VIB Training & Conferences13
- ELIXIR12
- ELIXIR Estonia10
- Centre for Digital Life Norway7
- ELIXIR Norway7
- PerMedCoE6
- Barcelona Supercomputing Center (BSC)4
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- IFB French Institute of Bioinformatics4
- Novo Nordisk Foundation Center for Protein Research3
- University of Edinburgh3
- ELIXIR: The Czech Republic Node2
- European Bioinformatics Institute (EBI)2
- NanoCommons2
- SciLifeLab2
- Software Sustainability Institute2
- Cloud-SPAN1
- DeiC – Danish e-Infrastructure Cooperation1
- Department of Bioinformatics - BiGCaT, Maastricht University1
- EOSC4Cancer1
- Health-RI1
- InterMine1
- Pattern Institute1
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- University of Cambridge Bioinformatics Training1
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- Keyword
- Bioinformatics68
- Galaxy Server administration68
- jupyter-notebook55
- Foundations of Data Science50
- Transcriptomics49
- biodiversity46
- Development in Galaxy45
- Statistics and machine learning45
- Proteomics42
- Single Cell41
- microgalaxy41
- Genomics40
- data management35
- Data management34
- FAIR Data, Workflows, and Research33
- Genome Annotation31
- Ecology30
- FAIR data30
- Microbiome30
- Contributing to the Galaxy Training Material27
- Using Galaxy and Managing your Data27
- Assembly25
- Data reuse24
- FAIR24
- metagenomics24
- FAIR principles23
- R23
- Workflows22
- RDM21
- ansible21
- programming20
- CfRR19
- FAIR Data19
- Metadata19
- git-gat19
- reproducible research19
- scientific computing19
- Imaging18
- Open Science18
- Variant Analysis18
- interactive-tools18
- work-in-progress18
- Climate17
- Data analysis17
- Teaching and Hosting Galaxy training17
- elixir17
- Data sharing16
- Genome annotation16
- HemaFAIR16
- Introduction to Galaxy Analyses16
- Reproducibility16
- data stewardship16
- fair16
- jbrowse116
- sensitive data15
- Epigenetics15
- Next generation sequencing15
- REDCap15
- earth-system15
- gmod15
- prokaryote15
- Online Repository14
- RNA-seq14
- Data mining13
- Metabolomics13
- Python13
- Research Data Management13
- Sequence analysis13
- metadata13
- Deep learning12
- Machine learning12
- assembly12
- cyoa12
- paper-replication12
- Data management planning11
- Analysis11
- European research projects11
- MIGHTS11
- Nextflow11
- REMBI11
- ai-ml11
- covid1911
- Evolution10
- Image segmentation10
- Version control10
- eukaryote10
- label-free10
- nanopore10
- ocean10
- plants10
- workflows10
- DDA9
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- Data processing9
- Visualisation9
- one-health9
- Computational chemistry8
- Galaxy Community Building8
- Genome assembly8
- Single-cell sequencing8
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- Competency level
- Beginner705
- Not specified357
- Intermediate165
- Advanced22
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- Licence
- Creative Commons Attribution 4.0 International
- License Not Specified2523
- Creative Commons Attribution Share Alike 4.0 International145
- MIT License130
- GNU General Public License v3.0 only50
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International45
- Creative Commons Zero v1.0 Universal44
- Creative Commons Attribution Non Commercial Share Alike 4.0 International42
- Other (Not Open)24
- Apache License 2.017
- Other (Non-Commercial)15
- BSD 3-Clause "New" or "Revised" License14
- Creative Commons Attribution Non Commercial 4.0 International12
- Other (Attribution)6
- Creative Commons Attribution 1.0 Generic5
- Other (Open)4
- CeCILL Free Software License Agreement v2.13
- Creative Commons Attribution No Derivatives 4.0 International3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- GNU General Public License v2.0 only2
- Academic Free License v3.01
- Creative Commons Attribution 2.0 Generic1
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- Creative Commons Attribution Non Commercial Share Alike 2.0 Generic1
- Do What The F*ck You Want To Public License1
- Open Data Commons Attribution License v1.01
- The Unlicense1
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- Target audience
- Students570
- Galaxy Administrators113
- Instructors52
- Researchers35
- Scientific community26
- PhD candidate25
- Data stewards21
- Academia/ Research Institution16
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- Data managers16
- Industry16
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- Clinicians7
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- PhD students6
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- project manager6
- Beginner5
- Life scientists with programming skills5
- bioinformaticians5
- data stewards5
- All postgraduates4
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Bioinformatician4
- Graduate Students4
- Life Scientists4
- Professor4
- data steward / data manager4
- Biologists with little or no prior computational experience3
- Data Scientists3
- Industry Professionals3
- Post-Doctoral Fellows3
- Postdocs and Staff members3
- Professors3
- Scientists3
- Academics2
- Beginners2
- Bench biologists2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Chemists2
- Computational biologists2
- Curators2
- Data Steward2
- Database users2
- Graduate students2
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics.2
- Research scientists2
- Trainers2
- data manager2
- life science researchers2
- life scientists2
- plant researchers2
- policy officer2
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Clinical Scientists1
- DMP writers1
- Data Manager1
- Data scientists1
- Developers wanting to distribute their MPI dependent software1
- ECR1
- EIP members1
- ELIXIR members1
- Early Career Researcher1
- General Interest1
- Graduates1
- HPC system maintainers wanting to enable MPI containers1
- IT support1
- Imaging Core Facility Staff1
- Librarians1
- Life sciences1
- Life scientists1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Modellers1
- Node Coordinators1
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research1
- OMERO trainers1
- OMERO users1
- PhD1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- Policy makers1
- Post docs1
- PostDocs1
- Postdoctoral Researchers1
- Postdoctoral researcher1
- Postdoctoral researchers1
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- Author
- Helena Rasche127
- Bérénice Batut111
- Saskia Hiltemann65
- Björn Grüning49
- Simon Gladman33
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Yvan Le Bras28
- Nate Coraor27
- Subina Mehta27
- Donat Agosti25
- John Chilton25
- Julia Giora25
- Nicola Soranzo25
- Plazi Verein25
- SIB Swiss Institute of Bioinformatics25
- The Carpentries23
- Fotis E. Psomopoulos21
- Saskia Lawson-Tovey20
- Anne Fouilloux19
- Coding for Reproducible Research Initiative19
- Marie Josse19
- Wendi Bacon19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper17
- Mehmet Tekman17
- Paul Zierep16
- The Gulbenkian Training Programme in Bioinformatics16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Julia Jakiela14
- Monique Zahn14
- Pratik Jagtap14
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- James Johnson13
- Katherine Do13
- Maria Doyle13
- Mijke Jetten13
- Wolfgang Maier13
- Marius van den Beek12
- Melanie Föll12
- Simon Bray12
- Anup Kumar11
- Khaled Jum'ah11
- Pavankumar Videm11
- Daniel Blankenberg10
- Korbinian Bösl10
- Martin Čech10
- Anika Erxleben9
- Celia van Gelder9
- Egon Willighagen9
- Federico Bianchini9
- Praveen Kumar9
- Anne Pajon8
- Avans Hogeschool8
- Diana Pilvar8
- Emma Leith8
- Fred Hutch Data Science Lab8
- Joachim Wolff8
- Kaivan Kamali8
- Lucille Delisle8
- Robert Andrews8
- Sara Morsy8
- Stéphanie Robin8
- Timothy J. Griffin8
- Alex Ostrovsky7
- Alexander Botzki7
- Alexandre Cormier7
- Anna Syme7
- Beatriz Serrano-Solano7
- Branka Franicevic7
- Christopher Barnett7
- Diana Chiang Jurado7
- Erwan Corre7
- Florian Christoph Sigloch7
- Gildas Le Corguillé7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
- Nadia Goué7
- Nazeefa Fatima7
- Patricia Palagi7
- Ray Sajulga7
- Allegra Via6
- Andrew Mason6
- Beecroft, Sarah6
- Clemens Blank6
- Coline Royaux6
- Deshpande, Nandan6
- ELIXIR Goblet Train the Trainers6
- Jeremy Goecks6
- Junhao Qiu6
- Morgan Howells6
- Paulo Cilas Morais Lyra Junior6
- Philippe Rocca-Serra6
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- Contributor
- Saskia Hiltemann590
- Helena Rasche501
- Björn Grüning419
- Bérénice Batut256
- Nicola Soranzo171
- Martin Čech128
- Anthony Bretaudeau106
- Cristóbal Gallardo104
- Niall Beard90
- Wendi Bacon77
- Nate Coraor70
- Armin Dadras64
- Gildas Le Corguillé63
- Marius van den Beek60
- William Durand59
- Simon Gladman53
- Beatriz Serrano-Solano48
- Teresa Müller48
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras44
- Pavankumar Videm40
- Robert Andrews40
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Munazah Andrabi34
- Anup Kumar32
- Simon Bray28
- Subina Mehta28
- Anne Fouilloux24
- Donny Vrins24
- Maria Doyle23
- Peter van Heusden23
- Julia Jakiela21
- Bazante Sanders19
- Leonid Kostrykin19
- Anton Nekrutenko18
- Tristan Reynolds18
- Deepti Varshney17
- Khaled Jum'ah17
- Paul Zierep17
- Pratik Jagtap17
- Delphine Lariviere16
- Geert van Geest16
- Petros Kountouris16
- David López14
- Marisa Loach14
- Mira Kuntz14
- Mélanie Petera14
- Matthias Bernt13
- Timothy J. Griffin13
- Candace Savonen12
- Daniela Schneider12
- Pablo Moreno12
- Carrie Wright11
- Dave Clements11
- Diana Chiang Jurado11
- Gianmauro Cuccuru11
- Katarzyna Kamieniecka11
- Stéphanie Robin11
- jhudsl-robot11
- Wandrille D.10
- actions-user10
- Anna Syme9
- John Chilton9
- Kate Isaac9
- Mallory Freeberg9
- Paul De Geest9
- Alexandre Cormier8
- Amirhossein Naghsh Nilchi8
- Florian Heyl8
- Kaivan Kamali8
- Melissa Burke8
- Solenne Correard8
- Verena Moosmann8
- Allyson Lister7
- Christopher Barnett7
- Daniel Sobral7
- Hans-Rudolf Hotz7
- Katherine Do7
- Morgan Howells7
- Tomas Klingström7
- Bert Droesbeke6
- Catherine Bromhead6
- Clemens Blank6
- Ekaterina Polkh6
- Enis Afgan6
- Florian Christoph Sigloch6
- Linelle Abueg6
- Paulo Cilas Morais Lyra Junior6
- Riccardo Massei6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Andrea Bagnacani5
- Clea Siguret5
- Deepak Tanwar5
- Elizabeth Humphries5
- Fabio Cumbo5
- John Davis5
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- Resource type
- e-learning552
- slides186
- tutorial48
- Presentation47
- Video40
- lessons40
- Training materials32
- Slidedeck27
- exercise26
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- video21
- Slides19
- Exercise17
- Documentation16
- Handout16
- Lecture16
- Scripts16
- Tutorial11
- Online material4
- PDF4
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- tutorials4
- Recorded webinar3
- course materials3
- slideck/ presentation3
- Course materials2
- Learning pathway2
- Series of videos2
- online course2
- youtube video2
- Carpentries style curriculum1
- Coding1
- Computational Biology1
- E-Learning1
- Jupyter notebooks1
- Open educational resource1
- Poster1
- Recording1
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- additional reading1
- case studies1
- didactic activities1
- hackathon1
- handbook1
- implementation guidelines1
- scripts1
- slide deck / presentation1
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- Related resource
- Associated Training Datasets326
- Associated Workflows305
- Jupyter Notebook (with Solutions)53
- Jupyter Notebook (without Solutions)53
- Quarto/RMarkdown Notebook6
- DMPonline2
- DisProt2
- Research Data Management in Life Sciences2
- Slides2
- Workshop recording2
- ARROWSMITH1
- DS Wizard ELIXIR-Norway 1
- Data Stewardship Wizard1
- Data Visualisation (theory) 1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- R basics1
- RCN Open data policy 1
- RDMkit1
- RNA-seq data package1
- Ready For BioData Management?1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
- recorded guidance on how to install a SciNote account1
- recorded intro to hackathon1
- recorded presentation on integration of ELNs in nanosciences1
- seq-seq-pan1
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- Node
- Switzerland141
- United Kingdom63
- Netherlands52
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- Czech Republic4
- Denmark4
- Spain4
- Italy3
- Sweden3
- Finland2
- Germany2
- Greece1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community15
- RDMbites: REDCap14
- RDMbites: Data management essentials13
- RDMbites: Image data10
- Elements of Data Management7
- PINK project7
- SARS-CoV-2 : Studying a new virus5
- RDMbites: Equality, Diversity, Inclusion and Justice in RDM4
- RDMbites: Sensitive data4
- ELIXIR SIS-Containers - collection of training materials3
- RDMbites: Sequencing data3
- ELIXIR Systems Biology Community: training events and materials2
- ELIXIR Toxicology Community2
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Federated Human Data Community1
- PHENotyping and EnviroTyping (PHENET training collection)1
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