Materials - TeSS (Training eSupport System)

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- Scientific topic
- R152
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- Genome annotation139
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- RNA-Seq112
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- Small RNA sequencing112
- Small RNA-Seq112
- Small-Seq112
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- WTSS112
- Whole transcriptome shotgun sequencing112
- miRNA-seq112
- Chromosome walking101
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- DNA-Seq101
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- High throughput sequencing101
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- NGS101
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- Python77
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- Data management76
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- FAIR data63
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- Active learning61
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- Single-cell genomics60
- Single-cell sequencing60
- Data rendering47
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- Breakend assembly38
- Genome assembly38
- Genomic assembly38
- Sequence assembly (genome assembly)38
- Variant pattern analysis38
- Functional genome annotation33
- Metagenome annotation33
- Structural genome annotation33
- Pipelines27
- Software integration27
- Tool integration27
- Tool interoperability27
- Workflows27
- Metagenomics24
- Shotgun metagenomics24
- Cloud computing21
- Computer science21
- HPC21
- High performance computing21
- High-performance computing21
- Antimicrobial stewardship17
- ChIP-exo17
- ChIP-seq17
- ChIP-sequencing17
- Chip Seq17
- Chip sequencing17
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- Operation
- Data handling9
- File handling9
- File processing9
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- Data extraction6
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- Data retrieval (metadata)6
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- Normalisation3
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- Data visualisation2
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- Alignment1
- Alignment construction1
- Alignment generation1
- Allele calling1
- Data editing1
- Data formatting1
- Data reformatting1
- Exome variant detection1
- File format conversion1
- File formatting1
- File reformatting1
- Format conversion1
- Genome variant detection1
- Germ line variant calling1
- Mutation detection1
- Quality control1
- Read pre-processing1
- Sequence read pre-processing1
- Somatic variant calling1
- Validation1
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- Tool
- V-pipe2
- ViralZone2
- Cellosaurus1
- GlyConnect1
- ISMARA1
- nextstrain.org1
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- Standard database or policy
- Ontology Lookup Service2
- Cellosaurus1
- ModelArchive1
- PRoteomics IDEntifications database1
- Resource Identification Portal 1
- The European Genome-phenome Archive1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
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- Content provider
- Glittr.org831
- ERGA Knowledge Hub128
- SIB Swiss Institute of Bioinformatics115
- BY-COVID31
- ELIXIR2
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- Keyword
- R305
- Python126
- Genomics118
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- Transcriptomics117
- RNA-seq113
- Data management75
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- Data science67
- Machine learning62
- Single-cell sequencing61
- Unix/Linux60
- FAIR data57
- Reproducibility57
- Variant analysis49
- Data visualization47
- Version control47
- Genome assembly39
- General36
- Genome annotation34
- training31
- Long read sequencing26
- Workflows26
- Metagenomics25
- Containerization22
- Shiny22
- FAIR21
- High performance computing20
- Spatial transcriptomics20
- Nextflow19
- ChIP-seq18
- Docker18
- Microbiology18
- Comparative genomics17
- Artificial intelligence16
- Julia14
- Quarto14
- ATAC-seq13
- Clinical data13
- Epigenetics13
- Galaxy13
- Image analysis13
- Pathways and Networks13
- Enrichment analysis12
- Rmarkdown12
- genes and genomes11
- Cloud computing10
- FAIRsharing10
- Proteomics10
- Singularity10
- Epidemiology9
- Knowledge graph9
- Multiomics9
- RDF9
- SPARQL9
- Snakemake9
- databases9
- policies9
- reproducibility9
- standards9
- Database Management8
- Ontology8
- Population genetics8
- Science Communication8
- medicine and health8
- next generation sequencing8
- data management7
- programming7
- ABS6
- Data submission6
- Interoperability6
- Quality Control6
- SARS-CoV-26
- biostatistics6
- data visualisation6
- services and resources6
- Assembly Evaluation5
- CWL5
- Citizen Science5
- Educational resources5
- Large language models5
- Metabolomics5
- Nagoya5
- Phylogenetics / Phylogenomics5
- Query data5
- Research Data Management5
- alan bridge group5
- torsten schwede & thierry sengstag group5
- Open Science4
- SQL4
- Social sciences4
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- basic research4
- environmental science4
- experimental biology4
- infectious disease4
- mark ibberson group4
- transcriptomics4
- DMEG3
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- Competency level
- Not specified998
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- Licence
- License Not Specified672
- Creative Commons Attribution 4.0 International141
- MIT License107
- Creative Commons Attribution Share Alike 4.0 International67
- GNU General Public License v3.0 only45
- Creative Commons Zero v1.0 Universal33
- BSD 3-Clause "New" or "Revised" License14
- Apache License 2.012
- Creative Commons Attribution Non Commercial Share Alike 4.0 International6
- Creative Commons Attribution Non Commercial 4.0 International4
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- Do What The F*ck You Want To Public License1
- The Unlicense1
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- Target audience
- Bioinformaticians16
- Data Managers13
- Data Scientists13
- Research Scientists13
- Biomedical Researchers12
- Bench biologists5
- Researchers5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists4
- Laboratory technicians4
- Veterinarians4
- Biologists with little or no prior computational experience3
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Life Science Researchers2
- Ontologists2
- PhD students2
- Trainers2
- Training Designers2
- Training instructors2
- bioinformaticians2
- All postgraduates1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone who wants to become a good trainer or teacher1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Biologists, Genomicists, Computer Scientists1
- Biomedical researchers1
- Clinical Scientists1
- Clinicians1
- Data Scientist1
- Data managers1
- Data stewards1
- Graduate Students1
- Industry Professionals1
- Life science researchers who are new to high performance computing1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Operators, developers and managers of bioinformatics resources1
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics.1
- Postdocs and Staff members1
- Research scientists1
- Researcher in life sciences1
- Students1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- beginner bioinformaticians1
- biocurators1
- post-docs1
- statisticians1
- teachers1
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- Author
- SIB Swiss Institute of Bioinformatics107
- The Carpentries Incubator52
- bioinformatics.ca35
- Teaching materials at the Harvard Chan Bioinformatics Core25
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- The Gulbenkian Training Programme in Bioinformatics19
- UC Davis Bioinformatics Core Training Page18
- Data Carpentry17
- posit::conf(2024)17
- Monique Zahn14
- Wandrille Duchemin14
- CRUK CI Bioinformatics Core13
- Personalized Health Informatics Group13
- Canadian Bioinformatics Workshops10
- Fred Hutch Data Science Lab10
- ELIXIR Estonia9
- rstudio::conf(2022)9
- Geert van Geest8
- Sundeep Agarwal8
- Biocore@CRG7
- Bioinformatics, Rockefeller University7
- Sergio Martínez Cuesta7
- Vasundra Touré7
- BU-ISCIII6
- JuliaAcademy6
- Philippe Le Mercier6
- Robin Engler6
- Software Carpentry6
- VIB Training & Conferences6
- Deepak Tanwar5
- ELIXIR Europe Training5
- Grégoire Rossier5
- Hadley Wickham5
- Health Data Science Sandbox5
- MolSSI Education5
- The Carpentries Lab5
- Vassilios Ioannidis5
- cambiotraining5
- jhudsl5
- Alex's Lemonade Stand Foundation4
- Computational Biology and Bioinformatics at UCLouvain4
- Elisabeth Gasteiger4
- Institut Français de Bioinformatique (IFB)4
- RStudio4
- Rami Krispin4
- Ted Laderas4
- Waldron Lab at the CUNY SPH4
- coderefinery4
- Boas Pucker3
- C. Li3
- Firas Zemzem3
- Frédéric Burdet3
- Heinz Stockinger3
- Joana Carlevaro3
- Julien Roux3
- Lukas Weber3
- Marie-Claude Blatter3
- Mark Robinson3
- Philippe Lemercier3
- R Programming @ University of Cincinnati3
- RStudio Education3
- Rafael A Irizarry3
- Richard McElreath3
- Roger D. Peng3
- Sydney Informatics Hub3
- VIB Technologies: Training material and software projects3
- VIB Training & Conferences Program3
- Volker Flegel3
- posit-dev3
- Aedin Culhane2
- Allen Downey2
- Ana-Claudia Sima2
- Antonello Lobianco2
- BiGCaT, Department of Translational Genomics2
- Bioconductor2
- Bradley Boehmke2
- Bruno Rodrigues2
- Cloud-SPAN2
- David Dalpiaz2
- Davis Laboratory2
- Deepak Unni2
- ELIXIR-Norway Training2
- Emil Hvitfeldt2
- Jake Vanderplas2
- James W. MacDonald2
- Jennifer (Jenny) Bryan2
- Jessica Lindvall2
- Joao Lourenço2
- Jose A Dianes2
- Leiden Computational Biology Center2
- Marc Robinson-Rechavi2
- Markus Müller2
- Markus Müller and Thuong Van Du Tran2
- Martin Emons2
- Martin J Frigaard2
- Master of Environmental Data Science (MEDS) program2
- Melbourne Bioinformatics2
- Met Office2
- Norm Matloff2
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- Contributor
- Toby Hodges77
- François Michonneau68
- Erin Becker62
- Zhian N. Kamvar58
- Mine Cetinkaya-Rundel56
- Katrin Leinweber53
- Tracy Teal53
- Raniere Silva52
- W. Trevor King51
- Andy Boughton50
- maneesha50
- Katie Anne Mills48
- Maxim Belkin47
- Canadian Bioinformatics Workshops43
- David Pérez-Suárez43
- Gabriel A. Devenyi43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Greg Wilson41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Rémi Emonet38
- William L. Close38
- Rayna M Harris37
- Sarah Brown35
- Gerard Capes33
- trk31
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Alex Whan27
- Christina K.26
- Paula Andrea Martinez26
- Renato Alves26
- Michael Joseph25
- Anthony Gitter24
- João Rodrigues24
- Geert van Geest23
- Sarah Stevens21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- Robert Davey20
- The Gulbenkian Training Programme in Bioinformatics19
- Paola Prieto18
- C. Titus Brown17
- Aaron O'Leary16
- Will Gammerdinger16
- Annajiat Alim Rasel15
- Hannah Lyman15
- John Blischak15
- Mark Fernandes15
- Meeta Mistry15
- Radhika Khetani15
- Trevor Bekolay15
- Benson Muite14
- Bianca Peterson14
- Candace Savonen14
- Carrie Wright13
- Lex Nederbragt13
- Mateusz Kuzak13
- Wolmar Nyberg Åkerström13
- jhudsl-robot13
- zhibinlu13
- Karen Word12
- Laurent Gatto12
- Ethan White11
- Hugo Tavares11
- JCSzamosi11
- Jihe Liu11
- Karen Cranston11
- Kate Isaac11
- Kilian Lieret11
- Miguel Cardoso11
- Niclas Jareborg11
- Pete Bachant11
- Radovan Bast11
- Stéphane Guillou11
- Wandrille D.11
- Yihui Xie11
- Ariel Rokem10
- Elin Kronander10
- Ivan Gonzalez10
- Jason Williams10
- Jennifer (Jenny) Bryan10
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- Resource type
- e-learning21
- Video14
- E-learning9
- Training materials9
- Mock data3
- E-Learning2
- Computer Software1
- Lecture1
- Presentation1
- Slideshow1
- Toolkit1
- Training materials with mock data1
- Tutorial1
- ViralZone1
- workflow1
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- Node
- Switzerland
- EMBL-EBI512
- United Kingdom226
- France158
- Belgium86
- Netherlands85
- Germany43
- Czech Republic32
- Portugal30
- Norway24
- Estonia22
- Finland22
- Spain21
- Sweden18
- Cyprus16
- Slovenia16
- Luxembourg9
- Italy8
- Denmark7
- Greece4
- Israel1
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- Collection
- Elements of Data Management5
- SARS-CoV-2 : Studying a new virus5
- PINK project4
- ELIXIR Biodiversity Community1
- HemaFAIR Training: Applying FAIR Principles in Hematology Research1
- Impact of research infrastructures1
- VIP138 SLOT Online Terbaik saat ini di Indonesia1
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- Active32
- Archived2
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