Training materials
-
Day 1 - RNA-Seq Analysis
Alignment BAM FASTA FASTQ QC
-
Data objects for R practice codes
R-programming
-
Introduction to NGS and RNA-seq
HTS-introduction Data-format Alignment Differential-expression Feature-summarisation QC
-
RNA-seq module Frederik Coppens
RNA-Seq RNA-Seq Alignment BAM FASTQ Feature-summarisation Pre-processing QC
-
Day 2 - RNA-Seq Analysis
Alignment BAM FASTA FASTQ QC Exploratory-analysis Feature-summarisation Pre-processing
-
ChIP-seq analysis using R
ChIP-Seq Experimental-design QC Data-format Alignment Peak-calling Differential-binding Visualisation Annotation
-
Alignment
RNA-Seq BAM Populus-tremula RNA-Seq QC Alignment
-
Annotation
RNA-Seq GFF3 Populus-tremula RNA-Seq Annotation
-
Lecture slides for the course RNA-seq data analysis with Chipster
FASTQ QC Pre-processing Alignment BAM Expression-estimation Feature-summarisation Differential-expression Statistical-model Exploratory-analysis
-
Introduction to HTS
HTS-introduction