TeSS (Training eSupport System)

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- Scientific topic
- Data management246
- Metadata management246
- Research data management (RDM)246
- Genome annotation231
- Exomes209
- Genomes209
- Genomics209
- Personal genomics209
- Synthetic genomics209
- Viral genomics209
- Whole genomes209
- Comparative transcriptomics192
- Transcriptome192
- Transcriptomics192
- MicroRNA sequencing174
- RNA sequencing174
- RNA-Seq174
- RNA-Seq analysis174
- Small RNA sequencing174
- Small RNA-Seq174
- Small-Seq174
- Transcriptome profiling174
- WTSS174
- Whole transcriptome shotgun sequencing174
- miRNA-seq174
- FAIR data167
- Findable, accessible, interoperable, reusable data167
- R153
- R program153
- R script153
- Bayesian methods148
- Biostatistics148
- Descriptive statistics148
- Gaussian processes148
- Inferential statistics148
- Markov processes148
- Multivariate statistics148
- Probabilistic graphical model148
- Probability148
- Statistics148
- Statistics and probability148
- Algorithms129
- Computer programming129
- Data structures129
- Programming languages129
- Software development129
- Software engineering129
- High-throughput sequencing116
- Chromosome walking115
- Clone verification115
- DNA-Seq115
- DNase-Seq115
- High throughput sequencing115
- NGS115
- NGS data analysis115
- Next gen sequencing115
- Next generation sequencing115
- Panels115
- Primer walking115
- Sanger sequencing115
- Sequencing115
- Targeted next-generation sequencing panels115
- Active learning93
- Ensembl learning93
- Kernel methods93
- Knowledge representation93
- Machine learning93
- Neural networks93
- Recommender system93
- Reinforcement learning93
- Supervised learning93
- Unsupervised learning93
- Bioinformatics91
- Metagenomics83
- Shotgun metagenomics83
- Python78
- Python program78
- Python script78
- py78
- Bottom-up proteomics76
- Discovery proteomics76
- MS-based targeted proteomics76
- MS-based untargeted proteomics76
- Metaproteomics76
- Peptide identification76
- Protein and peptide identification76
- Proteomics76
- Quantitative proteomics76
- Targeted proteomics76
- Top-down proteomics76
- Biodiversity70
- Data rendering62
- Data visualisation62
- Single-cell genomics62
- Single-cell sequencing62
- Antimicrobial stewardship56
- Medical microbiology56
- Microbial genetics56
- Microbial physiology56
- Microbial surveillance56
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- Operation
- Data handling57
- File handling57
- File processing57
- Processing57
- Report handling57
- Utility operation57
- Data extraction18
- Data retrieval18
- Data retrieval (metadata)18
- Metadata retrieval18
- Retrieval18
- Data visualisation16
- Molecular visualisation16
- Plotting16
- Rendering16
- Visualisation16
- Data analysis13
- Annotation11
- Data brokering11
- Data deposition11
- Data deposition brokering11
- Data submission11
- Database deposition11
- Database submission11
- Mathematical modelling11
- Modelling and simulation11
- Data management planning8
- Database retrieval8
- Query8
- Query and retrieval8
- Quality control5
- Validation5
- Allele calling4
- Database search4
- Exome variant detection4
- Functional enrichment analysis4
- GSEA4
- Gene set analysis4
- Gene-set enrichment analysis4
- Gene-set over-represenation analysis4
- Genome variant detection4
- Germ line variant calling4
- Methylation analysis4
- Methylation profile analysis4
- Mutation detection4
- Normalisation4
- Search4
- Somatic variant calling4
- Standardisation4
- Standardisation and normalisation4
- Variant calling4
- Variant mapping4
- de novo mutation detection4
- Data formatting2
- Data reformatting2
- Design2
- File format conversion2
- File formatting2
- File reformatting2
- Format conversion2
- Ontology browsing2
- Ontology visualisation2
- Peptide database search2
- Peptide identification2
- Peptide-spectrum-matching2
- RNA-Seq analysis2
- Alignment1
- Alignment construction1
- Alignment generation1
- Biological network analysis1
- Biological network modelling1
- Biological network prediction1
- Classification1
- Comparison1
- Data editing1
- Data filtering1
- Expression analysis1
- Expression data analysis1
- Functional genome annotation1
- Gene expression analysis1
- Gene expression data analysis1
- Gene expression regulation analysis1
- Genome annotation1
- Image analysis1
- Metagenome annotation1
- Metagenomic inference1
- Microarray data analysis1
- Multiple alignment1
- Multiple sequence alignment1
- Network analysis1
- Network comparison1
- Network modelling1
- Network prediction1
- Network simulation1
- Network topology simulation1
- Protein expression analysis1
- Protein secondary structure visualisation1
- RNA secondary structure visualisation1
- Read pre-processing1
- Sequence classification1
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- Tool
- Galaxy365
- Bioconductor242
- FastQC36
- Data Stewardship Wizard30
- SAMtools27
- MultiQC26
- BWA21
- REDCap20
- BEDTools17
- fastp16
- scikit-learn16
- JBrowse15
- SCANPY15
- Falco14
- Cutadapt13
- DeepTools13
- ggplot213
- BLAST12
- QUAST12
- RDMkit12
- BUSCO11
- Galaxy Image Analysis11
- RStudio11
- STAR11
- GEMINI10
- scikit-image10
- taxonomy_krona_chart10
- FreeBayes9
- NanoPlot9
- Trimmomatic9
- Bandage8
- FASTX-Toolkit8
- BCFtools7
- BamTools7
- Biopython7
- HISAT27
- Ontology Lookup Service7
- Trim Galore7
- msConvert7
- seqtk7
- European Nucleotide Archive (ENA)6
- Flye6
- MAFFT6
- MaxQuant6
- Minimap26
- Open Babel6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- BridgeDb5
- COPASI5
- DESeq25
- Galactic Circos5
- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
- Salmon5
- StringTie5
- anndata5
- annotatemyids5
- compute_sequence_length5
- gffcompare5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Chipster4
- Diamond4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- QualiMap4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- BridgeDbR3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
- OMArk3
- OMERO3
- R3
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- Standard database or policy
- FAIRsharing6
- RDA DMP Common Standard for Machine-Actionable Data Management Plans5
- European Nucleotide Archive4
- NCBI Gene4
- Bioconductor3
- Ensembl3
- Common Workflow Language2
- DisProt2
- Minimum Information about Plant Phenotyping Experiment2
- OBO Foundry2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- The Observational Medical Outcomes Partnership Common Data Model2
- eNanoMapper Ontology2
- Wheat Data Interoperability Guidelines 1
- BRENDA1
- BcForms Grammar1
- Bioschemas1
- BpForms Grammar1
- BridgeDb1
- Cellosaurus1
- Chemical Entities of Biological Interest1
- Crop Ontology1
- Datanator1
- FAIR sharing1
- FAIRtracks1
- Gene3D1
- Genomics England | PanelApp1
- HumanMine1
- IUPAC International Chemical Identifier1
- Identifiers.org Registry1
- Integrated resource of protein families, domains and functional sites1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- MDL molfile Format1
- MGnify1
- ModelArchive1
- Multi-Crop Passport Descriptors1
- ObjTables1
- Observational Medical Outcomes Partnership Standard Vocabulary1
- PRINTS1
- Plant Phenotype Experiment Ontology1
- Research Object Crate1
- Resource Identification Portal 1
- SUPERFAMILY1
- Schema.org1
- Simplified Molecular Input Line Entry Specification Format1
- Stress Knowledge Map1
- Structural Classification Of Proteins1
- The FAIR Principles1
- The Human Metabolome Database1
- UniProt Knowledgebase1
- Wheat Trait Ontology1
- Wikidata1
- WorkflowHub1
- Worldwide Protein Data Bank1
- Zenodo 1
- data.eNanoMapper.net1
- i2b2-patient_visit_dimensions1
- neXtProt1
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- Content provider
- Glittr.org837
- GTN833
- European Bioinformatics Institute (EBI)490
- Bioconductor242
- IFB French Institute of Bioinformatics149
- ERGA Knowledge Hub128
- SIB Swiss Institute of Bioinformatics115
- GOBLET110
- Australian BioCommons88
- Bioinformatics Visualization72
- ELXIR-UK DaSH70
- Software Carpentry70
- Bioinformatics and Biomathematics Training Hub62
- NGS Registry60
- DTLS - Dutch Techcentre For Life Sciences41
- VIB Training & Conferences38
- de.NBI36
- Data Carpentry34
- Khan Academy Statistics32
- BY-COVID31
- VIB Bioinformatics Core30
- Canadian Bioinformatics Workshops26
- ELIXIR24
- Coding for Reproducible Research (CfRR)19
- Coursera19
- VBCF BioComp19
- ELIXIR Portugal18
- CINECA PROJECT17
- CSC - IT Center for Science13
- ELIXIR Norway13
- ELIXIR Estonia12
- PerMedCoE12
- NBIS11
- VHP4Safety10
- eNanoMapper10
- Bioschemas9
- EMBL-ABR9
- NanoCommons9
- Barcelona Supercomputing Center (BSC)8
- Centre for Digital Life Norway8
- Department of Bioinformatics - BiGCaT, Maastricht University8
- Genome 3D8
- InterMine8
- Centre for Genomic Regulation (CRG)7
- BioData.pt6
- Data Steward team Ghent University6
- ELIXIR Luxembourg6
- ELIXIR-SI eLearning Platform (EeLP)6
- ELIXIR: The Czech Republic Node6
- Danish National Health Data Science Sandbox5
- ELIXIR Slovenia5
- LIPID MAPS5
- UNIVERSE-HPC project5
- COG-Train4
- Proteomics Academy4
- University of Cambridge Bioinformatics Training4
- ELIXIR AAI3
- Novo Nordisk Foundation Center for Protein Research3
- Pattern Institute3
- University of Edinburgh3
- DeiC – Danish e-Infrastructure Cooperation2
- SciLifeLab2
- Software Sustainability Institute2
- The Carpentries2
- Biomedical Sciences Research Center "Alexander Fleming"1
- CNAG-CRG1
- Cloud-SPAN1
- EOSC4Cancer1
- ExCALIBUR1
- FAIRsharing1
- Fraunhofer FIT1
- Future Learn1
- Health-RI1
- NYU Langone Health1
- Open Science MOOC1
- Seqera1
- UCLouvain Bioinformatics Platform1
- VIB Conferences1
- WikiPathways1
- proteomicsML1
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- Keyword
- R331
- Genomics169
- Transcriptomics161
- Python149
- RNA-seq128
- Next generation sequencing119
- Data management104
- Bioinformatics98
- Statistics80
- FAIR data78
- FAIR70
- Galaxy Server administration68
- Machine learning68
- Reproducibility68
- Data science67
- Unix/Linux62
- Single-cell sequencing61
- Proteomics56
- Workflows55
- jupyter-notebook55
- data management54
- Data visualization52
- Version control52
- Foundations of Data Science50
- Variant analysis50
- biodiversity47
- metagenomics47
- Development in Galaxy45
- Statistics and machine learning45
- Genome assembly43
- Galaxy41
- Single Cell41
- microgalaxy41
- Metagenomics40
- training39
- General36
- Genome annotation36
- Rare Diseases & Research36
- FAIR Data, Workflows, and Research33
- Microbiome33
- QC33
- Nextflow32
- Genome Annotation31
- Ecology30
- programming30
- Assembly28
- FAIR principles28
- Genome28
- Metadata28
- Molecular28
- Alignment27
- Contributing to the Galaxy Training Material27
- Data analysis27
- Phylogenetics27
- Using Galaxy and Managing your Data27
- biohackaton 201827
- Epigenetics26
- Long read sequencing26
- RDM26
- bioinformatics26
- Docker25
- Data reuse24
- High performance computing24
- Annotation23
- Containerization23
- data stewardship23
- ChIP-seq22
- Metabolomics22
- Microbiology22
- Shiny22
- Spatial transcriptomics22
- metadata22
- NGS21
- Open Science21
- RNA-Seq21
- ansible21
- reproducible research21
- BAM20
- FASTQ20
- Imaging20
- Research Data Management20
- life-sciences20
- sensitive data19
- CfRR19
- Cloud computing19
- Differential-expression19
- FAIR Data19
- Pre-processing19
- REDCap19
- Sequence analysis19
- git-gat19
- scientific computing19
- Artificial intelligence18
- Comparative genomics18
- Data sharing18
- Programming18
- Variant Analysis18
- interactive-tools18
- transcriptomics18
- work-in-progress18
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- Competency level
- Not specified3048
- Beginner972
- Intermediate283
- Advanced51
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- Licence
- License Not Specified2529
- Creative Commons Attribution 4.0 International1252
- Creative Commons Attribution Share Alike 4.0 International145
- MIT License130
- GNU General Public License v3.0 only50
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International45
- Creative Commons Zero v1.0 Universal44
- Creative Commons Attribution Non Commercial Share Alike 4.0 International42
- Other (Not Open)24
- Apache License 2.017
- Other (Non-Commercial)15
- BSD 3-Clause "New" or "Revised" License14
- Creative Commons Attribution Non Commercial 4.0 International12
- Other (Attribution)6
- Creative Commons Attribution 1.0 Generic5
- Other (Open)4
- CeCILL Free Software License Agreement v2.13
- Creative Commons Attribution No Derivatives 4.0 International3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- GNU General Public License v2.0 only2
- Academic Free License v3.01
- Creative Commons Attribution 2.0 Generic1
- Creative Commons Attribution No Derivatives 2.0 Generic1
- Creative Commons Attribution Non Commercial 2.0 Generic1
- Creative Commons Attribution Non Commercial Share Alike 2.0 Generic1
- Do What The F*ck You Want To Public License1
- Open Data Commons Attribution License v1.01
- The Unlicense1
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- Target audience
- Students574
- Researchers240
- PhD students189
- Biologists, Genomicists, Computer Scientists170
- Post-Doctoral Fellows165
- Clinicians128
- Galaxy Administrators113
- Graduate students88
- Graduate Students82
- Life Science Researchers79
- Biologists55
- Instructors52
- post-docs48
- Novice44
- bioinformaticians42
- Bioinformaticians34
- PhD candidate27
- Intermediate26
- Scientific community26
- beginner bioinformaticians26
- Data Managers23
- Data stewards23
- PhD candidates23
- Scientists22
- Bench biologists19
- PhD Students18
- Academia/ Research Institution17
- Data Scientists17
- Industry17
- Non-Profit Organisation17
- Beginners16
- Data Scientist16
- Data managers16
- Trainers16
- life scientists16
- Healthcare15
- health professionals13
- Master students13
- Research Scientists13
- Researcher in life sciences13
- data stewards13
- Biomedical Researchers12
- Computational biologists12
- Researcher12
- healthcare professionals12
- software developers, bioinformaticians12
- Post Docs11
- biocurators11
- Biomedical researchers9
- Life scientists9
- Training Designers9
- Training instructors9
- biologists9
- Health Care Professionals8
- Life Scientists8
- Patient Advocates 8
- PhD8
- modelers8
- rare disease patients representatives7
- Beginner7
- Bioinformatician7
- Life scientists with programming skills7
- All postgraduates6
- Clinical Scientists6
- PI6
- computational scientists6
- data managers6
- plant researchers6
- project manager6
- Chemists5
- General Interest5
- Professors5
- Undergraduate students5
- genomics researchers5
- postdocs5
- postgrad5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Curators4
- Laboratory technicians4
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
- Postgraduate students4
- Professor4
- Veterinarians4
- data steward / data manager4
- postdoctoral researchers4
- researchers4
- systems biologists4
- Bioinformatician, Bioanalysts3
- Data Steward3
- Database users3
- General Physicians3
- Industry Professionals3
- Ontologists3
- Policy makers3
- Postdocs and Staff members3
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
- Technicians3
- geneticists3
- life science researchers3
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- Author
- Helena Rasche127
- Bérénice Batut111
- SIB Swiss Institute of Bioinformatics108
- Martin Morgan97
- Saskia Hiltemann66
- The Carpentries Incubator52
- Björn Grüning50
- Simon Gladman37
- The Gulbenkian Training Programme in Bioinformatics36
- bioinformatics.ca35
- bebatut32
- bgruening32
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Yvan Le Bras28
- Nate Coraor27
- Subina Mehta27
- Donat Agosti25
- John Chilton25
- Julia Giora25
- Nicola Soranzo25
- Plazi Verein25
- Teaching materials at the Harvard Chan Bioinformatics Core25
- Saskia Lawson-Tovey24
- The Carpentries24
- Egon Willighagen22
- Fotis E. Psomopoulos21
- Michelle Brazas21
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- Anne Fouilloux19
- Coding for Reproducible Research Initiative19
- Marie Josse19
- Wendi Bacon19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper18
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
- András Aszódi17
- Data Carpentry17
- Mehmet Tekman17
- Wandrille Duchemin17
- posit::conf(2024)17
- shiltemann17
- Paul Zierep16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Sergio Martínez Cuesta15
- Alexander Botzki14
- Julia Jakiela14
- Maria Doyle14
- Mijke Jetten14
- Monique Zahn14
- Pratik Jagtap14
- nekrut14
- CRUK CI Bioinformatics Core13
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- James Johnson13
- Katherine Do13
- Personalized Health Informatics Group13
- Wolfgang Maier13
- Andrew Mason12
- Celia van Gelder12
- Jenny Drnevich @jenny12
- Korbinian Bösl12
- Marius van den Beek12
- Melanie Föll12
- Patricia Palagi12
- Simon Andrews12
- Simon Bray12
- Anup Kumar11
- Eija Korpelainen11
- Geert van Geest11
- Khaled Jum'ah11
- Mathieu Bourgey11
- Pavankumar Videm11
- Various11
- Allegra Via10
- Canadian Bioinformatics Workshops10
- Daniel Blankenberg10
- Federico Bianchini10
- Fred Hutch Data Science Lab10
- Martin Čech10
- Paul Yorke10
- Anika Erxleben9
- David Wishart9
- ELIXIR Estonia9
- Jared Simpson9
- Lucille Delisle9
- Praveen Kumar9
- allegra.via Via9
- rstudio::conf(2022)9
- Anne Pajon8
- Avans Hogeschool8
- Bastian Schiffthaler @bastian8
- Boris Steipe8
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- Contributor
- Saskia Hiltemann594
- Helena Rasche501
- Björn Grüning420
- Bérénice Batut263
- Nicola Soranzo180
- Martin Čech128
- Anthony Bretaudeau107
- Cristóbal Gallardo104
- Niall Beard90
- Toby Hodges83
- Wendi Bacon77
- Nate Coraor70
- François Michonneau69
- Armin Dadras64
- Erin Becker63
- Gildas Le Corguillé63
- Marius van den Beek60
- William Durand59
- Zhian N. Kamvar59
- Mine Cetinkaya-Rundel56
- Robert Andrews55
- Katrin Leinweber54
- Raniere Silva54
- Simon Gladman54
- Tracy Teal53
- W. Trevor King52
- Andy Boughton51
- maneesha51
- Beatriz Serrano-Solano49
- Katie Anne Mills48
- Maxim Belkin48
- Teresa Müller48
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras45
- David Pérez-Suárez44
- Gabriel A. Devenyi44
- Canadian Bioinformatics Workshops43
- Munazah Andrabi43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Greg Wilson41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Pavankumar Videm40
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Rémi Emonet38
- William L. Close38
- Rayna M Harris37
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Sarah Brown35
- Gerard Capes34
- Maria Doyle33
- Anup Kumar32
- Renato Alves31
- trk31
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Christina K.28
- Simon Bray28
- Subina Mehta28
- Alex Whan27
- Paula Andrea Martinez26
- Anne Fouilloux25
- Michael Joseph25
- Anthony Gitter24
- Donny Vrins24
- Geert van Geest24
- João Rodrigues24
- Peter van Heusden23
- Sarah Stevens22
- Julia Jakiela21
- Robert Davey21
- Wolmar Nyberg Åkerström21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- Leonid Kostrykin20
- Bazante Sanders19
- The Gulbenkian Training Programme in Bioinformatics19
- Anton Nekrutenko18
- Elin Kronander18
- Niclas Jareborg18
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- Resource type
- e-learning741
- Recorded webinar302
- Video199
- slides191
- Tutorial134
- Training materials77
- Presentation66
- Course materials62
- Webinar62
- Slides60
- Talk53
- lessons53
- tutorial50
- hands-on tutorial38
- video38
- Slidedeck32
- course materials31
- Documentation30
- exercise26
- Scripts20
- Exercise18
- Handout17
- Lecture16
- Poster16
- PDF14
- Slideshow14
- E-learning10
- E-Learning8
- Jupyter notebook7
- Series of videos6
- FREE online course6
- Online material6
- Bioinformatics5
- Coding5
- online course5
- online modules5
- tutorials5
- youtube video5
- examples4
- podcast4
- Book3
- Computational Biology3
- Computer Science3
- Computer Software3
- Data Science3
- Education3
- How-to guide3
- Learning pathway3
- Life Sciences Literature Database3
- Mock data3
- Programming3
- e-Learning3
- online tutorial3
- scripts3
- slideck/ presentation3
- API reference2
- Installation instructions2
- Manual2
- Open educational resource2
- Series of videos2
- Vignette2
- case studies2
- educational materials2
- handbook2
- knowledgebase2
- presentation2
- workflow2
- Blog post1
- Carpentries style curriculum1
- E-learning + workshop1
- Educational Resource1
- Jupyter notebooks1
- Life Science Literature Database1
- Machine Learning1
- Metadata Registry1
- Notes1
- Quiz1
- R Shiny application1
- Recording1
- Tool1
- Toolkit1
- Training materials with mock data1
- Transcriptomics1
- ViralZone1
- Workshop1
- additional reading1
- didactic activities1
- hackathon1
- implementation guidelines1
- slide deck / presentation1
- slides / presentation1
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- Related resource
- Associated Training Datasets327
- Associated Workflows306
- Jupyter Notebook (with Solutions)53
- Jupyter Notebook (without Solutions)53
- Input datasets34
- Research Data Management in Life Sciences11
- Associated slides9
- The Carpentries7
- Development in Galaxy slides6
- Quarto/RMarkdown Notebook6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Slides4
- Variant Analysis dataset4
- Assembly slides3
- DMPonline3
- Data Stewardship Wizard3
- Workshop recording3
- ChIP-Seq data analysis dataset2
- DisProt2
- Epigenetics dataset2
- Galaxy Server administration slides2
- Genome Annotation dataset2
- Metagenomics dataset2
- OpenCloning2
- Sequence analysis slides2
- pydna2
- ARROWSMITH1
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- COBRA Toolbox1
- CanCOGeN1
- Chipster1
- Contributing to the Galaxy Training Material slides1
- DMPortal1
- DS Wizard ELIXIR-Norway 1
- Data Visualisation (theory) 1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- ELIXIR's Impact Toolkit1
- ENA1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- FAIRplus FAIRification wizard1
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Graylab/DL4Proteins-notebooks

Neoantigen 1a: Fusion-Database-Generation

Neoantigen 2: Non-normal-Database-Generation

Neoantigen 4: Variant Annotation

Neoantigen 3: PepQuery2 Verification

Neoantigen 2: Database merge and FragPipe discovery

Neoantigen 5b: IEDB binding Validated Neopeptides

Neoantigen 5a: Predicting HLA Binding

scottmreed/Code_withGPT_tutorial

scottmreed/molecular_informatics