Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Antimicrobial stewardship3
    • Exomes3
    • Genome annotation3
    • Genomes3
    • Genomics3
    • Medical microbiology3
    • Microbial genetics3
    • Microbial physiology3
    • Microbial surveillance3
    • Microbiological surveillance3
    • Microbiology3
    • Molecular infection biology3
    • Molecular microbiology3
    • Personal genomics3
    • Synthetic genomics3
    • Viral genomics3
    • Whole genomes3
    • Assembly2
    • Communicable disease2
    • DNA polymorphism2
    • DNA variation2
    • Genetic variation2
    • Genomic variation2
    • Infectious disease2
    • Microsatellites2
    • Mutation2
    • Polymorphism2
    • RFLP2
    • SNP2
    • Sequence assembly2
    • Single nucleotide polymorphism2
    • Somatic mutations2
    • Transmissible disease2
    • VNTR2
    • Variable number of tandem repeat polymorphism2
    • snps2
    • Biological sequences1
    • Epidemiology1
    • Evolution1
    • Evolutionary biology1
    • Public health1
    • Public health and epidemiology1
    • Sequence analysis1
    • Sequence databases1
    • Show N_FILTERS more
    • Tool
    • Galaxy363
    • FastQC36
    • Data Stewardship Wizard29
    • SAMtools27
    • MultiQC26
    • Bioconductor24
    • BWA21
    • REDCap20
    • BEDTools17
    • fastp16
    • scikit-learn16
    • JBrowse15
    • SCANPY15
    • Falco14
    • Cutadapt13
    • DeepTools13
    • ggplot213
    • BLAST12
    • QUAST12
    • RDMkit12
    • BUSCO11
    • RStudio11
    • STAR11
    • GEMINI10
    • Galaxy Image Analysis10
    • scikit-image10
    • taxonomy_krona_chart10
    • NanoPlot9
    • Trimmomatic9
    • Bandage8
    • FASTX-Toolkit8
    • FreeBayes8
    • BCFtools7
    • BamTools7
    • Ontology Lookup Service7
    • Trim Galore7
    • msConvert7
    • seqtk7
    • Biopython6
    • European Nucleotide Archive (ENA)6
    • Flye6
    • HISAT26
    • MAFFT6
    • MaxQuant6
    • Minimap26
    • Open Babel6
    • Unicycler6
    • Workflow4Metabolomics6
    • gffread6
    • BridgeDb5
    • COPASI5
    • DESeq25
    • Galactic Circos5
    • MetaPhlAn5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • SRA Software Toolkit5
    • Salmon5
    • anndata5
    • annotatemyids5
    • compute_sequence_length5
    • kraken25
    • xcms5
    • Bowtie 24
    • Bwa-mem24
    • CellProfiler4
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • QualiMap4
    • StringTie4
    • The Protein Data Bank (PDB)4
    • UniProt4
    • bx-python4
    • gffcompare4
    • mothur4
    • snpEff4
    • Apollo3
    • Bakta3
    • Bracken3
    • BridgeDbR3
    • Cardinal3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • OMArk3
    • OMERO3
    • R3
    • Show N_FILTERS more
    • Content provider
    • GTN3
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • prokaryote3
    • Variant Analysis2
    • one-health2
    • Evolution1
    • gmod1
    • jbrowse11
    • tuberculosis1
    • Show N_FILTERS more
    • Competency level
    • Intermediate2
    • Beginner1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Simon Gladman2
    • Anna Syme1
    • Christoph Stritt1
    • Daniela Brites1
    • Galo A. Goig1
    • Peter van Heusden1
    • Thoba Lose1
    • Torsten Seemann1
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning3
    • Helena Rasche3
    • Peter van Heusden3
    • Saskia Hiltemann3
    • Anthony Bretaudeau2
    • Bérénice Batut2
    • Wolfgang Maier2
    • Christoph Stritt1
    • Cristóbal Gallardo1
    • Galo A. Goig1
    • Jennifer Hillman-Jackson1
    • Linelle Abueg1
    • Lucille Delisle1
    • Maria Doyle1
    • Mélanie Petera1
    • Niall Beard1
    • Nicola Soranzo1
    • Simon Gladman1
    • Tristan Reynolds1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show materials from all spaces
  • Hide disabled materials
  • Show materials with broken links
  • Hide archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: snippy

and Include disabled: true

and Include archived: true

3 materials found
  • e-learning

    M. tuberculosis Variant Analysis

    •• Intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
  • e-learning

    Microbial Variant Calling

    • Beginner
    Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy …
  • e-learning

    Identifying tuberculosis transmission links: from SNPs to transmission clusters

    •• Intermediate
    Evolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.