Materials - TeSS (Training eSupport System)

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- Scientific topic
- Data management71
- Metadata management71
- Research data management (RDM)71
- FAIR data45
- Findable, accessible, interoperable, reusable data45
- Genome annotation6
- Exomes5
- Genomes5
- Genomics5
- Open science5
- Personal genomics5
- Synthetic genomics5
- Viral genomics5
- Whole genomes5
- Comparative transcriptomics4
- Data brokering4
- Data deposition4
- Data deposition brokering4
- Data submission4
- Database deposition4
- Database submission4
- Diffraction experiment4
- Imaging4
- Microscopy4
- Microscopy imaging4
- Optical super resolution microscopy4
- Photonic force microscopy4
- Photonic microscopy4
- Transcriptome4
- Transcriptomics4
- Chromosome walking3
- Clone verification3
- DNA-Seq3
- DNase-Seq3
- Data rendering3
- Data visualisation3
- Genetic variation analysis3
- Genetic variation annotation3
- High throughput sequencing3
- High-throughput sequencing3
- MicroRNA sequencing3
- NGS3
- NGS data analysis3
- Next gen sequencing3
- Next generation sequencing3
- Panels3
- Primer walking3
- RNA sequencing3
- RNA-Seq3
- RNA-Seq analysis3
- SPARQL3
- SPARQL Protocol and RDF Query Language3
- Sanger sequencing3
- Sequence variation analysis3
- Sequencing3
- Small RNA sequencing3
- Small RNA-Seq3
- Small-Seq3
- Targeted next-generation sequencing panels3
- Transcript variant analysis3
- Transcriptome profiling3
- Variant analysis3
- WTSS3
- Whole transcriptome shotgun sequencing3
- miRNA-seq3
- Breakend assembly2
- Comparative genomics2
- Content management2
- Database management2
- Document management2
- File management2
- Functional genome annotation2
- Genome assembly2
- Genomic assembly2
- Metagenome annotation2
- Metagenomics2
- Record management2
- SQL2
- Sequence assembly (genome assembly)2
- Sequence read processing2
- Shotgun metagenomics2
- Structural genome annotation2
- Structured Query Language2
- Algorithms1
- Applied ontology1
- Bayesian methods1
- Bioinformatics1
- Biostatistics1
- Computer programming1
- DNA methylation1
- Data clean-up1
- Data cleaning1
- Data integrity1
- Data quality1
- Data quality management1
- Data structures1
- Descriptive statistics1
- Dietetics1
- Epigenetics1
- Exometabolomics1
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- Operation
- Data analysis1
- Data handling1
- File handling1
- File processing1
- Processing1
- Report handling1
- Utility operation1
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- Tool
- RStudio3
- Galaxy2
- Data Stewardship Wizard1
- European Nucleotide Archive (ENA)1
- Ontology Lookup Service1
- RDMkit1
- Zooma1
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- Content provider
- Glittr.org56
- ERGA Knowledge Hub16
- NBIS9
- GTN4
- ELIXIR3
- ELXIR-UK DaSH3
- European Bioinformatics Institute (EBI)3
- BY-COVID2
- Australian BioCommons1
- BioData.pt1
- DTLS - Dutch Techcentre For Life Sciences1
- ELIXIR Estonia1
- Fraunhofer FIT1
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- Keyword
- Data management
- R319
- Transcriptomics152
- Genomics148
- Python142
- Next generation sequencing115
- RNA-seq115
- Bioinformatics94
- Statistics77
- FAIR data76
- Galaxy Server administration68
- Machine learning67
- FAIR66
- Reproducibility65
- Data science64
- Unix/Linux61
- Single-cell sequencing59
- data management54
- jupyter-notebook54
- Proteomics53
- Workflows52
- Foundations of Data Science50
- Data visualization49
- Version control49
- Variant analysis48
- biodiversity47
- Development in Galaxy45
- Genome assembly43
- Statistics and machine learning43
- Single Cell41
- microgalaxy41
- training38
- General36
- Genome annotation36
- Metagenomics36
- FAIR Data, Workflows, and Research33
- Microbiome32
- Genome Annotation31
- Nextflow31
- Ecology30
- programming30
- Genome28
- Molecular28
- Assembly27
- Contributing to the Galaxy Training Material27
- Metadata27
- Using Galaxy and Managing your Data27
- metagenomics27
- Data analysis26
- Epigenetics26
- Long read sequencing26
- Phylogenetics25
- RDM25
- Data reuse24
- FAIR principles24
- Containerization23
- High performance computing23
- Docker22
- Microbiology22
- Spatial transcriptomics22
- data stewardship22
- Open Science21
- Rare Diseases & Research21
- Shiny21
- ansible21
- reproducible research21
- Imaging20
- metadata20
- sensitive data19
- CfRR19
- ChIP-seq19
- FAIR Data19
- Galaxy19
- Metabolomics19
- REDCap19
- git-gat19
- life-sciences19
- scientific computing19
- Cloud computing18
- Comparative genomics18
- Programming18
- Variant Analysis18
- interactive-tools18
- Artificial intelligence17
- Climate17
- Data sharing17
- Sequence analysis17
- Teaching and Hosting Galaxy training17
- work-in-progress17
- HemaFAIR16
- Introduction to Galaxy Analyses16
- Research Data Management16
- Roslin Institute16
- Shell16
- fair16
- jbrowse116
- Data mining15
- Quarto15
- bioinformatics15
- earth-system15
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- Competency level
- Not specified82
- Beginner16
- Intermediate3
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- Licence
- License Not Specified46
- Creative Commons Attribution 4.0 International34
- Creative Commons Attribution Share Alike 4.0 International12
- MIT License4
- Creative Commons Zero v1.0 Universal2
- GNU Affero General Public License v3.0 only2
- GNU General Public License v3.0 only1
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- Target audience
- PhD candidates10
- Researcher in life sciences9
- Scientists9
- Students4
- Clinicians3
- PhD students3
- Life Science Researchers2
- Bioinformaticians1
- Chemists1
- DMP writers1
- ECR1
- The course is aimed at research scientists with a minimum of a degree in a biological discipline, including laboratory and clinical staff, as well as specialists in related fields.1
- This workshop is aimed at PhD students within the PhD programme "Genetics, Molecular and Cellular Biology" (University of Pavia) and the PhD programmme "Biomolecular Sciences and Biotechnology" (IUSS, University School for Advanced Studies Pavia.1
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- Author
- NBIS - National Bioinformatics Infrastructure Sweden9
- The Carpentries Incubator6
- Data Carpentry3
- Diana Pilvar3
- Erik Hedman3
- Niclas Jareborg3
- SIB Swiss Institute of Bioinformatics3
- Fred Hutch Data Science Lab2
- Institut Français de Bioinformatique (IFB)2
- Julia Jakiela2
- Katarzyna Kamieniecka2
- Krzysztof Poterlowicz2
- Laura Cooper2
- Markus Englund2
- Mattias Strömberg2
- Sara Morsy2
- Stephan Nylinder2
- Yvonne Kallberg2
- jhudsl2
- Ana M.P. Melo1
- Andreas Pippow1
- Ann-Kathrin Bernards1
- BiGCaT, Department of Translational Genomics1
- BioData.pt1
- BioRDM1
- Branka Franicevic1
- British Ecological Society Better Science Guides1
- CRUK CI Bioinformatics Core1
- Coding For Reproducible Research (CfRR)1
- Daniel Faria1
- ELIXIR Belgium1
- ELIXIR Europe1
- ELIXIR Europe Training1
- ELIXIR-Norway Training1
- Elin Kronander1
- FAIR-by-Design-Methodology1
- Franziska Scallan1
- Galaxy Project1
- Genome Informatics Facility1
- Genomics Aotearoa1
- Health Data Science Sandbox1
- Heleri Inno1
- Hofmann, Oliver1
- Maarten Paul1
- Martin Etzrodt1
- Melbourne Bioinformatics1
- Mijke Jetten1
- NFDI4BIOIMAGE1
- NUTRIOME1
- OBOAcademy1
- OpenSciency1
- Pope, Bernie1
- RStudio Education1
- Riccardo Massei1
- Robert Andrews1
- SciLifeLab-Training1
- Taouk, Kamile1
- The Carpentries Lab1
- Utrecht University1
- VIB Technologies: Training material and software projects1
- VIB Training & Conferences1
- Wolmar Nyberg Åkerström1
- Wong-Erasmus, Marie1
- bioinformatics.ca1
- feichtingerm1
- posit-conf-20231
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- Contributor
- Elin Kronander16
- Wolmar Nyberg Åkerström16
- Toby Hodges15
- François Michonneau13
- Zhian N. Kamvar13
- Erin Becker12
- Tracy Teal12
- Niclas Jareborg11
- maneesha11
- Michael R. Crusoe10
- Paula Andrea Martinez10
- Remi Rampin10
- Abby Cabunoc Mayes9
- Allen Lee9
- Andy Boughton9
- Christina K.9
- David Pérez-Suárez9
- James Allen9
- Jon Pipitone9
- Katie Anne Mills9
- Katrin Leinweber9
- Michael Hansen9
- Piotr Banaszkiewicz9
- Rayna M Harris9
- Rémi Emonet9
- Sarah Brown9
- W. Trevor King9
- Alex Whan8
- Ana Conrado8
- Andrew Sanchez8
- Anthony Gitter8
- Brandon Curtis8
- David Mawdsley8
- EvanWill8
- Gabriel A. Devenyi8
- Gerard Capes8
- Greg Wilson8
- Henry Schreiner8
- Ian Lee8
- Jeff Oliver8
- Jemma Stachelek8
- Joel Nothman8
- Jonah Duckles8
- João Rodrigues8
- K.E. Koziar8
- Markus Englund8
- Maxim Belkin8
- Michael Joseph8
- Nick Young8
- Paola Prieto8
- Raniere Silva8
- Renato Alves8
- Stephan Druskat8
- William L. Close8
- YvonneKallberg8
- naught1018
- trk8
- Erik Hedman7
- Mattias Strömberg7
- Stephan Nylinder7
- Yvonne Kallberg7
- rdbjorvang6
- Beatriz Serrano-Solano5
- Candace Savonen4
- Carrie Wright4
- Kate Isaac4
- Leonid Kostrykin4
- Tomasz Zielinski4
- actions-user4
- jhudsl-robot4
- Björn Grüning3
- Edward Wallace3
- Federico Bianchini3
- Munazah Andrabi3
- Pete3
- Robert Davey3
- Saskia Hiltemann3
- Stephan3
- hackmd-deploy3
- livia-scorza3
- Aleksandra Pawlik2
- Benson Muite2
- Bert Droesbeke2
- BioData.pt Admin2
- Christian2
- Christie Bahlai2
- Daniel Faria2
- Danielle Welter2
- De2
- Diana Pilvar2
- Ethan White2
- Frederik Coppens2
- Geert van Geest2
- Gil Poiares-Oliveira2
- Helena Rasche2
- Helene Chiapello2
- Heleri Inno2
- Hilmar Lapp2
- JCSzamosi2
- Julien Seiler2
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- Resource type
- e-learning17
- lessons13
- Video3
- Course materials1
- Documentation1
- Presentation1
- Training materials1
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- Related resource
- The Carpentries7
- Associated Training Datasets2
- Associated Workflows2
- GitHub1
- OpenRefine1
- RDMkit1
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- Node
- Switzerland74
- Sweden9
- Estonia4
- EMBL-EBI3
- United Kingdom3
- Netherlands1
- Portugal1
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- Collection
- RDMbites: Data management essentials3
- Elements of Data Management2
- PINK project2
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- Status
- Active17
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