Training materials
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e-learning
Genome annotation with Prokka
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Making sense of a newly assembled genome
• BeginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
e-learning
Unicycler Assembly
• BeginnerSequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
Tree thinking for tuberculosis evolution and epidemiology
• BeginnerEvolutionary biology Genomics Microbiology Phylogeny Infectious disease Evolution microgalaxy one-health phylogenetics prokaryote -
e-learning
Identifying tuberculosis transmission links: from SNPs to transmission clusters
•• IntermediateEvolutionary biology Genomics Microbiology Infectious disease DNA polymorphism Evolution microgalaxy one-health prokaryote -
e-learning
metaQuantome 3: Taxonomy
•• IntermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy Proteomics microgalaxy -
e-learning
metaQuantome 2: Function
•• IntermediateProteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Proteomics microgalaxy -
e-learning
metaQuantome 1: Data creation
•• IntermediateProteomics Proteogenomics Biodiversity Taxonomy Proteomics microgalaxy