Materials - TeSS (Training eSupport System)

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- Scientific topic
- Transcriptomics
- Data management238
- Metadata management238
- Research data management (RDM)238
- Genome annotation219
- Exomes198
- Genomes198
- Genomics198
- Personal genomics198
- Synthetic genomics198
- Viral genomics198
- Whole genomes198
- Comparative transcriptomics186
- Transcriptome186
- FAIR data161
- Findable, accessible, interoperable, reusable data161
- R150
- R program150
- R script150
- Bayesian methods128
- Biostatistics128
- Descriptive statistics128
- Gaussian processes128
- Inferential statistics128
- Markov processes128
- Multivariate statistics128
- Probabilistic graphical model128
- Probability128
- Statistics128
- Statistics and probability128
- MicroRNA sequencing125
- RNA sequencing125
- RNA-Seq125
- RNA-Seq analysis125
- Small RNA sequencing125
- Small RNA-Seq125
- Small-Seq125
- Transcriptome profiling125
- WTSS125
- Whole transcriptome shotgun sequencing125
- miRNA-seq125
- Algorithms121
- Computer programming121
- Data structures121
- Programming languages121
- Software development121
- Software engineering121
- Chromosome walking106
- Clone verification106
- DNA-Seq106
- DNase-Seq106
- High throughput sequencing106
- High-throughput sequencing106
- NGS106
- NGS data analysis106
- Next gen sequencing106
- Next generation sequencing106
- Panels106
- Primer walking106
- Sanger sequencing106
- Sequencing106
- Targeted next-generation sequencing panels106
- Active learning89
- Ensembl learning89
- Kernel methods89
- Knowledge representation89
- Machine learning89
- Neural networks89
- Recommender system89
- Reinforcement learning89
- Supervised learning89
- Unsupervised learning89
- Bioinformatics86
- Metagenomics81
- Shotgun metagenomics81
- Python75
- Python program75
- Python script75
- py75
- Biodiversity69
- Bottom-up proteomics63
- Discovery proteomics63
- MS-based targeted proteomics63
- MS-based untargeted proteomics63
- Metaproteomics63
- Peptide identification63
- Protein and peptide identification63
- Proteomics63
- Quantitative proteomics63
- Targeted proteomics63
- Top-down proteomics63
- Single-cell genomics60
- Single-cell sequencing60
- Data rendering59
- Data visualisation59
- Antimicrobial stewardship56
- Medical microbiology56
- Microbial genetics56
- Microbial physiology56
- Microbial surveillance56
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- Operation
- Expression analysis1
- Expression data analysis1
- Gene expression analysis1
- Gene expression data analysis1
- Gene expression regulation analysis1
- Metagenomic inference1
- Microarray data analysis1
- Protein expression analysis1
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- Tool
- Galaxy37
- MultiQC8
- FastQC7
- STAR7
- SAMtools6
- DESeq25
- RSeQC5
- Salmon5
- ggplot25
- GOseq4
- HISAT24
- SCANPY4
- BEDTools3
- Biopython3
- Cutadapt3
- Falco3
- Trim Galore3
- anndata3
- DeepTools2
- DropletUtils2
- FeatureCounts2
- Heinz2
- IsoformSwitchAnalyzeR2
- PfamScan2
- R2
- StringTie2
- Targetfinder.org2
- Trimmomatic2
- UMI-tools2
- annotatemyids2
- fastp2
- gffcompare2
- gffread2
- miRDeep22
- pyGenomeTracks2
- rnaQUAST2
- Alevin1
- BioContainers1
- Bioconductor1
- ChiRA1
- DESeq1
- EGSEA1
- Enrichr1
- GOEnrichment1
- GSEA1
- MEME1
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC1
- Nextflow1
- Peakachu1
- QualiMap1
- RCAS1
- RStudio1
- SRA Software Toolkit1
- Subread1
- Trinity1
- UCSC Genome Browser1
- biomaRt1
- blockbuster1
- fgsea1
- limma1
- nf-core-rnaseq1
- pathview1
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- Content provider
- Glittr.org107
- GTN49
- European Bioinformatics Institute (EBI)16
- ERGA Knowledge Hub6
- VIB Training & Conferences2
- Centre for Genomic Regulation (CRG)1
- ELIXIR Slovenia1
- Pattern Institute1
- VHP4Safety1
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- Keyword
- Transcriptomics145
- RNA-seq92
- Single-cell sequencing51
- Next generation sequencing38
- R34
- Genomics17
- Single Cell17
- Spatial transcriptomics12
- Variant analysis9
- General8
- Python7
- paper-replication6
- Genome annotation5
- MIGHTS5
- Pathways and Networks5
- mouse5
- transcriptomics5
- ATAC-seq4
- Data management4
- Enrichment analysis4
- Statistics4
- Unix/Linux4
- bulk4
- work-in-progress4
- Data visualization3
- Epigenetics3
- QC3
- Reproducibility3
- Version control3
- collections3
- rna-seq3
- 10x2
- ChIP-seq2
- Comparative genomics2
- FAIR data2
- Genome assembly2
- Long read sequencing2
- Multiomics2
- Nextflow2
- PCA2
- Quality Control2
- Quarto2
- Workflows2
- cyoa2
- interactive-tools2
- plants2
- RNA-Seq1
- Assembly Evaluation1
- BIoinformatics1
- Bioinformatics1
- CWL1
- Coding1
- Computational Biology1
- Computer Science1
- Containerization1
- Data Analysis1
- Data Science1
- Data analysis1
- Data submission1
- EeLP1
- Functional enrichment1
- Galaxy1
- High performance computing1
- Image analysis1
- Machine Learning1
- Machine learning1
- Metabolomics1
- Metagenomics1
- NGS1
- Ontology1
- Population genetics1
- Programming1
- Proteomics1
- RDM1
- RNA-Seq1
- RNASeq1
- RStudio1
- Rmarkdown1
- Single cell data1
- Snakemake1
- Spatial omics1
- Visualisation1
- alternative splicing1
- clustering1
- deutsch1
- drosophila1
- eLearning1
- español1
- isoform switching1
- italiano1
- jupyter-notebook1
- limma-voom1
- metatranscriptomics1
- miRNA1
- multi-omics data integration1
- network analysis1
- networks and pathways1
- nf-co.re1
- stress tolerance1
- transcriptomics, single-cell, 10x, paper-replication, interactive-tools1
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- Competency level
- Not specified134
- Beginner44
- Intermediate7
- Advanced1
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- Licence
- License Not Specified86
- Creative Commons Attribution 4.0 International65
- MIT License10
- Creative Commons Zero v1.0 Universal9
- GNU General Public License v3.0 only7
- Creative Commons Attribution Share Alike 4.0 International3
- BSD 3-Clause "New" or "Revised" License2
- Creative Commons Attribution Non Commercial Share Alike 4.0 International2
- Apache License 2.01
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
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- Target audience
- Students50
- Bioinformaticians2
- Life scientists2
- Researchers2
- Biologists1
- Biologists interested in learning about RNA-seq1
- Clinicians1
- PhD students1
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- Author
- Mehmet Tekman13
- UC Davis Bioinformatics Core Training Page9
- Maria Doyle8
- Pavankumar Videm8
- Teaching materials at the Harvard Chan Bioinformatics Core8
- Bérénice Batut7
- SIB Swiss Institute of Bioinformatics7
- Wendi Bacon6
- bioinformatics.ca6
- CRUK CI Bioinformatics Core5
- Cristóbal Gallardo5
- NBIS - National Bioinformatics Infrastructure Sweden5
- Anika Erxleben4
- The Gulbenkian Training Programme in Bioinformatics4
- Alex Ostrovsky3
- Alex's Lemonade Stand Foundation3
- Anthony Bretaudeau3
- Belinda Phipson3
- Canadian Bioinformatics Workshops3
- Mallory Freeberg3
- The Carpentries Incubator3
- Andrea Bagnacani2
- Anne Siegel2
- Beatriz Serrano-Solano2
- Biocore@CRG2
- Chao Zhang2
- Hans-Rudolf Hotz2
- Harriet Dashnow2
- Health Data Science Sandbox2
- Janick Mathys2
- Julia Jakiela2
- Julien Roux2
- Leiden Computational Biology Center2
- Lucille Delisle2
- Lukas Weber2
- Markus Wolfien2
- Mateo Boudet2
- Mo Heydarian2
- Nicola Soranzo2
- Olivier Dameron2
- Theis Lab2
- Xavier Garnier2
- Aedin Culhane1
- Amarinder Singh Thind1
- Anna Delgado Tejedor1
- Anna Trigos1
- Anton Nekrutenko1
- Bioconductor1
- Boas Pucker1
- Boston University1
- BrainOmicsCourse1
- Broad Institute1
- CDSB1
- Casper de Visser1
- Cellular Genomics Informatics1
- Charity Law1
- Charlotte Adang1
- Clemens Blank1
- Computational Biology and Bioinformatics at UCLouvain1
- Daniel Blankenberg1
- Daniel Maticzka1
- Deplancke's Lab1
- Diana Chiang Jurado1
- Dr Euan McDonnell1
- Dr Eva Caamano-Gutierrez1
- Dr John Heap1
- Dr Jordan Tzvetkov1
- ELIXIR Europe Training1
- Eija Korpelainen1
- Erasmus Medical Center1
- Erwan Corre1
- Fabian Andrade Lozano1
- Florian Heyl1
- Fotis E. Psomopoulos1
- Fred Hutch Data Science Lab1
- Genome Informatics Facility1
- Gildas Le Corguillé1
- Graham Etherington1
- Helena Rasche1
- IGC Bioinformatics Unit1
- Iacopo Cristoferi1
- Integrative Computational Biology and Multiomics Research Group1
- Isabel Duarte1
- Jonathan Manning1
- Jovana Maksimovic1
- Julia Ponomarenko1
- Katharina Hoff1
- Kelly Street1
- Khushbu Patel1
- Laboratory of Genomics and Bioinformatics1
- Liverpool Computational Biology Facility (CBF)1
- Luca Cozzuto1
- Marek Ostaszewski1
- Maria Lehtivaara1
- Martin Morgan1
- Matt Ritchie1
- Matti Hoch1
- Melbourne Bioinformatics1
- Monash Data Fluency1
- Myrthe van Baardwijk1
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- Contributor
- Helena Rasche43
- Saskia Hiltemann42
- Björn Grüning37
- Mehmet Tekman19
- Bérénice Batut18
- Nicola Soranzo18
- Pavankumar Videm14
- Wendi Bacon14
- Cristóbal Gallardo11
- Maria Doyle10
- Anthony Bretaudeau9
- Canadian Bioinformatics Workshops9
- Hannah Lyman9
- Gildas Le Corguillé8
- Lucille Delisle8
- Will Gammerdinger8
- Geert van Geest7
- Martin Čech7
- Niall Beard7
- Radhika Khetani7
- Hugo Tavares6
- Jihe Liu6
- Meeta Mistry6
- Abigail Edwards5
- Julia Jakiela5
- Matt Settles5
- William Durand5
- Amélie Julé4
- Armin Dadras4
- AshKernow4
- Beatriz Serrano-Solano4
- Mallory Freeberg4
- Miguel Cardoso4
- Simon Bray4
- The Gulbenkian Training Programme in Bioinformatics4
- ahmedmahfouz4
- bpdurbin4
- jessyjli4
- marypiper4
- msimoneau4
- Ally Hawkins3
- Amirhossein Naghsh Nilchi3
- Charlotte Soneson3
- Emma Dann3
- Florian Heyl3
- Hans-Rudolf Hotz3
- Heather Gibling3
- Ilya Sytchev3
- Jaclyn Taroni3
- Jen O'Malley3
- Joshua Shapiro3
- Julien Roux3
- Lukas Heumos3
- Lukas Weber3
- Marisa Loach3
- Marius van den Beek3
- Pablo Moreno3
- Philipp A.3
- Stefano Mangiola3
- Stephanie J. Spielman3
- Stéphanie Robin3
- TaniaW3
- Teresa Müller3
- Wolfgang Maier3
- Xavier Garnier3
- eberdan3
- hwick3
- zhibinlu3
- Åsa Björklund3
- Alexandru Mahmoud2
- Andrea Bagnacani2
- Anika Erxleben2
- Anna Schaar2
- Benedetta Manzato2
- Candace Savonen2
- Christopher Bottoms2
- CicoZhang2
- Darío Hereñú2
- David López2
- Deepak Tanwar2
- Eija Korpelainen2
- Elizabeth Partan2
- Federico Marini2
- Giovanni Palla2
- Gregor Sturm2
- Isaac Virshup2
- Isabel Duarte2
- Jcarlevaro2
- Jonathan Manning2
- Jose Alejandro Romero Herrera2
- Kelsy Cotto2
- Laurent Gatto2
- Luca Cozzuto2
- Malachi Griffith2
- MalteDLuecken2
- Maria Lehtivaara2
- Matthias Bernt2
- Mohammed2
- Morgan Howells2
- Nate Coraor2
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- Resource type
- e-learning38
- Recorded webinar15
- slides11
- hands-on tutorial4
- Training materials2
- Tutorial2
- Bioinformatics1
- Coding1
- Computational Biology1
- Computer Science1
- Course materials1
- Data Science1
- E-Learning1
- Education1
- Machine Learning1
- Programming1
- Slides1
- Transcriptomics1
- Video1
- course materials1
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- Related resource
- Associated Training Datasets42
- Associated Workflows35
- Jupyter Notebook (with Solutions)1
- Jupyter Notebook (without Solutions)1
- RNA-seq data package1
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- Node
- Switzerland113
- EMBL-EBI16
- Belgium2
- Czech Republic1
- Finland1
- Netherlands1
- Slovenia1
- Spain1
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- Status
- Active5
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Scientific topics: Transcriptomics

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