Training materials
-
e-learning
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy
• BeginnerImaging Image segmentation Imaging Parameter optimisation Validation -
e-learning
Using BioImage.IO models for image analysis in Galaxy
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
e-learning
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
• BeginnerImaging IDR dataset Imaging Overlay Rasterisation Spot detection -
e-learning
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
•• IntermediateImaging Data handling Data management Data sharing Imaging ROI selection -
e-learning
Tracking of mitochondria and capturing mitoflashes
•• IntermediateImaging Imaging Isolated object tracking Temporal analysis Time-lapse data -
Recorded webinar
Visualising integrated single cell and spatial transcriptomics datasets
Transcriptomics Imaging Omics
-
Recorded webinar
Building a spatial transcriptomics platform
Transcriptomics Imaging Light microscopy Omics
-
slides
Contribute to the BioImage.IO models
• BeginnerImaging Image analysis using Deep Learning bioimageio image analysis -
e-learning
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
• BeginnerImaging Bioimaging Data management FAIR Data, Workflows, and Research Metadata -
e-learning
FAIR Bioimage Metadata
• BeginnerImaging Bioimaging Data management FAIR Data, Workflows, and Research Metadata