Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Assembly5
    • Sequence assembly5
    • Biological sequences4
    • Community analysis4
    • Environmental microbiology4
    • Metagenomics4
    • Microbial ecology4
    • Microbiome4
    • Molecular community analysis4
    • Sequence analysis4
    • Sequence databases4
    • Shotgun metagenomics4
    • Taxonomy4
    • DNA variation3
    • Genetic variation3
    • Genomic variation3
    • Mutation3
    • Polymorphism3
    • Somatic mutations3
    • Biodiversity2
    • Comparative transcriptomics2
    • Epidemiology2
    • Exomes2
    • Genome annotation2
    • Genomes2
    • Genomics2
    • Personal genomics2
    • Public health2
    • Public health and epidemiology2
    • Synthetic genomics2
    • Transcriptome2
    • Transcriptomics2
    • Viral genomics2
    • Whole genomes2
    • Antimicrobial stewardship1
    • Computational ecology1
    • DNA metabarcoding1
    • De novo genome sequencing1
    • Disease1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Genome sequencing1
    • Medical microbiology1
    • Metabarcoding1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Molecular infection biology1
    • Molecular microbiology1
    • Pathology1
    • RNA metabarcoding1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • fastp
    • Galaxy363
    • FastQC36
    • Data Stewardship Wizard29
    • SAMtools27
    • MultiQC26
    • Bioconductor24
    • BWA21
    • REDCap20
    • BEDTools17
    • scikit-learn16
    • JBrowse15
    • SCANPY15
    • Falco14
    • Cutadapt13
    • DeepTools13
    • ggplot213
    • BLAST12
    • QUAST12
    • RDMkit12
    • BUSCO11
    • RStudio11
    • STAR11
    • GEMINI10
    • Galaxy Image Analysis10
    • scikit-image10
    • taxonomy_krona_chart10
    • NanoPlot9
    • Trimmomatic9
    • Bandage8
    • FASTX-Toolkit8
    • FreeBayes8
    • BCFtools7
    • BamTools7
    • Ontology Lookup Service7
    • Trim Galore7
    • msConvert7
    • seqtk7
    • Biopython6
    • European Nucleotide Archive (ENA)6
    • Flye6
    • HISAT26
    • MAFFT6
    • MaxQuant6
    • Minimap26
    • Open Babel6
    • Unicycler6
    • Workflow4Metabolomics6
    • gffread6
    • BridgeDb5
    • COPASI5
    • DESeq25
    • Galactic Circos5
    • MetaPhlAn5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • SRA Software Toolkit5
    • Salmon5
    • anndata5
    • annotatemyids5
    • compute_sequence_length5
    • kraken25
    • xcms5
    • Bowtie 24
    • Bwa-mem24
    • CellProfiler4
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • QualiMap4
    • StringTie4
    • The Protein Data Bank (PDB)4
    • UniProt4
    • bx-python4
    • gffcompare4
    • mothur4
    • snpEff4
    • Apollo3
    • Bakta3
    • Bracken3
    • BridgeDbR3
    • Cardinal3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • OMArk3
    • OMERO3
    • R3
    • Show N_FILTERS more
    • Content provider
    • GTN16
    • Show N_FILTERS more
    • Keyword
    • Assembly4
    • Microbiome4
    • microgalaxy4
    • Variant Analysis3
    • biodiversity3
    • covid193
    • nanopore3
    • one-health3
    • virology3
    • Introduction to Galaxy Analyses2
    • Transcriptomics2
    • assembly2
    • metabarcoding2
    • plants2
    • 16S1
    • Ecology1
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • alternative splicing1
    • amplicon1
    • beer1
    • citizen science1
    • cyoa1
    • illumina1
    • isoform switching1
    • metagenomics1
    • microbiome1
    • polishing1
    • taxonomic abundance1
    • taxonomy1
    • Show N_FILTERS more
    • Competency level
    • Beginner12
    • Advanced2
    • Intermediate2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International16
    • Show N_FILTERS more
    • Target audience
    • Students16
    • Show N_FILTERS more
    • Author
    • Cristóbal Gallardo4
    • Anton Nekrutenko3
    • Bérénice Batut3
    • Wolfgang Maier3
    • Daniel Blankenberg2
    • Dave Clements2
    • Marius van den Beek2
    • Anna Syme1
    • Bazante Sanders1
    • Engy Nasr1
    • John Beliveau1
    • Lucille Delisle1
    • Paul Zierep1
    • Polina Polunina1
    • Rand Zoabi1
    • Siyu Chen1
    • Teresa Müller1
    • Tomas Klingström1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann15
    • Helena Rasche13
    • Björn Grüning10
    • Wolfgang Maier9
    • Bérénice Batut8
    • Cristóbal Gallardo8
    • Anton Nekrutenko5
    • Deepti Varshney4
    • Nate Coraor3
    • Paul Zierep3
    • Teresa Müller3
    • Lucille Delisle2
    • Nicola Soranzo2
    • Anna Syme1
    • Anthony Bretaudeau1
    • Armin Dadras1
    • Bazante Sanders1
    • Beatriz Serrano-Solano1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • John Beliveau1
    • John Davis1
    • Marie Josse1
    • Mehmet Tekman1
    • Miaomiao Zhou1
    • Mélanie Petera1
    • Niall Beard1
    • Nuwan Goonasekera1
    • Pavankumar Videm1
    • Simon Gladman1
    • Siyu Chen1
    • Tristan Reynolds1
    • Verena Moosmann1
    • Willem de Koning1
    • William Durand1
    • Yvan Le Bras1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning14
    • slides2
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows14
    • Associated Training Datasets13
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Hide archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: fastp

and Include archived: true

16 materials found
  • e-learning

    Avian influenza viral strain analysis from gene segment sequencing data

    •• Intermediate
    Genetic variation Variant Analysis one-health virology
  • e-learning

    From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

    • Beginner
    Genetic variation Variant Analysis covid19 one-health virology
  • e-learning

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    •• Intermediate
    Sequence assembly Assembly biodiversity covid19
  • e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • Beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
  • e-learning

    NGS data logistics

    • Beginner
    Introduction to Galaxy Analyses
  • slides

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    • Beginner
    Sequence assembly Assembly covid19
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.