Materials - TeSS (Training eSupport System)

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- Scientific topic
- Bioinformatics
- Data management238
- Metadata management238
- Research data management (RDM)238
- Genome annotation220
- Exomes199
- Genomes199
- Genomics199
- Personal genomics199
- Synthetic genomics199
- Viral genomics199
- Whole genomes199
- Comparative transcriptomics187
- Transcriptome187
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- FAIR data162
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- R150
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- Bayesian methods128
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- Probability128
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- Statistics and probability128
- MicroRNA sequencing126
- RNA sequencing126
- RNA-Seq126
- RNA-Seq analysis126
- Small RNA sequencing126
- Small RNA-Seq126
- Small-Seq126
- Transcriptome profiling126
- WTSS126
- Whole transcriptome shotgun sequencing126
- miRNA-seq126
- Algorithms121
- Computer programming121
- Data structures121
- Programming languages121
- Software development121
- Software engineering121
- Chromosome walking106
- Clone verification106
- DNA-Seq106
- DNase-Seq106
- High throughput sequencing106
- High-throughput sequencing106
- NGS106
- NGS data analysis106
- Next gen sequencing106
- Next generation sequencing106
- Panels106
- Primer walking106
- Sanger sequencing106
- Sequencing106
- Targeted next-generation sequencing panels106
- Active learning89
- Ensembl learning89
- Kernel methods89
- Knowledge representation89
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- Recommender system89
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- Unsupervised learning89
- Metagenomics82
- Shotgun metagenomics82
- Python75
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- py75
- Biodiversity69
- Bottom-up proteomics63
- Discovery proteomics63
- MS-based targeted proteomics63
- MS-based untargeted proteomics63
- Metaproteomics63
- Peptide identification63
- Protein and peptide identification63
- Proteomics63
- Quantitative proteomics63
- Targeted proteomics63
- Top-down proteomics63
- Data rendering60
- Data visualisation60
- Single-cell genomics60
- Single-cell sequencing60
- Antimicrobial stewardship56
- Medical microbiology56
- Microbial genetics56
- Microbial physiology56
- Microbial surveillance56
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- Operation
- Data handling4
- File handling4
- File processing4
- Processing4
- Report handling4
- Utility operation4
- Data extraction2
- Data retrieval2
- Data retrieval (metadata)2
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- Retrieval2
- Database retrieval1
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- Functional genome annotation1
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- DISEASES2
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- UCSC Genome Browser2
- BioContainers1
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- Data Stewardship Wizard1
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- MultiQC1
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- PASTEClassifier1
- QualiMap1
- RDMkit1
- REPET1
- REXdb1
- SAMtools1
- SRA1
- STAR1
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- Trim Galore1
- bio.tools1
- biomaRt1
- ggplot21
- nf-core-rnaseq1
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- Standard database or policy
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- European Nucleotide Archive1
- FAIRsharing1
- MGnify1
- Ontology Lookup Service1
- RDA DMP Common Standard for Machine-Actionable Data Management Plans1
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- Content provider
- European Bioinformatics Institute (EBI)17
- Centre for Genomic Regulation (CRG)5
- GOBLET5
- ELIXIR Estonia4
- IFB French Institute of Bioinformatics4
- ELIXIR3
- PerMedCoE3
- ELIXIR Norway2
- Novo Nordisk Foundation Center for Protein Research2
- SIB Swiss Institute of Bioinformatics2
- Bioinformatics and Biomathematics Training Hub1
- Biomedical Sciences Research Center "Alexander Fleming"1
- Centre for Digital Life Norway1
- Cloud-SPAN1
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- Keyword
- FAIR Data14
- Data reuse13
- Online Repository13
- Data mining12
- FAIR Data, Workflows, and Research9
- Introduction9
- GoldenGATE Imagine7
- Bioinformatics6
- Data extraction6
- Data processing6
- Programming6
- HPC4
- Open Data4
- Python4
- TreatmentBank4
- bioinformatics4
- Annotation3
- Cloud computing3
- Data analysis3
- Data curation3
- Genomics3
- Global Biodiversity Information Facility3
- Materials Citation3
- R3
- Scientific Collections3
- Taxonomy3
- BLR2
- Bioinformatic databases2
- Coding2
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- Data publishing2
- FEGA2
- Federated EGA2
- Human genetic variation2
- Linux2
- Nextflow2
- Ontologies2
- Proteins2
- Python biologists2
- RStudio2
- Sequence Analysis2
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- Zenodo Community2
- data sharing2
- R-programming1
- Amazon Web Services1
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- BIoinformatics1
- Basic1
- Beginners1
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- Bioinformatic analysis1
- Building blocks1
- Business Inteligence1
- CONVERGE1
- COVID-191
- ChIP-Seq1
- Chemical biology1
- Cloning1
- Comparative genomics1
- Computational Biology1
- Computational biology1
- Computer Science1
- Computer science1
- Containerization1
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- Controlled vocabularies1
- Corona virus1
- Cross domain1
- Curation1
- DNA RNA1
- DNA engineering1
- Dashboard1
- Data1
- Data Life Cycle1
- Data Management1
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- Data Science1
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- Data Stewardship Wizard1
- Data Visualisation1
- Data access management1
- Data management1
- Data management planning1
- Data preserving1
- Data storage1
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- Databases1
- Dna rna1
- Docker1
- ELIXIR Converge1
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- Competency level
- Not specified30
- Beginner29
- Intermediate20
- Advanced7
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- Licence
- Creative Commons Attribution 4.0 International39
- License Not Specified32
- MIT License5
- Creative Commons Attribution Non Commercial Share Alike 4.0 International3
- Creative Commons Attribution Share Alike 4.0 International3
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- Creative Commons Zero v1.0 Universal1
- GNU General Public License v3.0 only1
- Other (Open)1
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- Target audience
- Scientific community26
- PhD students17
- Clinicians13
- Biologists8
- Bioinformaticians5
- Researchers5
- Students5
- PhD Students4
- Bioinformatician3
- Biomedical researchers3
- Life Science Researchers3
- Scientists3
- bioinformaticians3
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
- Beginner2
- Biologists with little or no prior computational experience2
- Biologists, Genomicists, Computer Scientists2
- Graduate students2
- PhD candidates2
- Trainers2
- beginner bioinformaticians2
- post-docs2
- Anyone interested in bioinformatics1
- Beginner informatics1
- Beginners1
- Beginners in statistics1
- Bioinformatician, Bioanalysts1
- Biologists and bioinformaticians1
- Biologists interested in learning about RNA-seq1
- Curators1
- Data Access Committeses from the EGA1
- Data Managers1
- Data Scientists1
- Data scientists1
- Data stewards1
- Developers1
- Early Career Researcher1
- General Interest1
- Graduate Students1
- Life Scientists1
- Life sciences1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Microbiologists1
- PI1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- PhD students in Genomics datascience1
- Post Docs1
- Post docs1
- Postdoctoral researchers1
- Principal Investigators1
- Principal Investigators (PIs)1
- Professors1
- Public Health Professionals1
- Researcher1
- Researcher in life sciences1
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA1
- Researchers and bioinformaticians involved in the VEIS project1
- Software providers1
- plant researchers1
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- Author
- Donat Agosti25
- Julia Giora25
- Plazi Verein25
- Frédéric de Lamotte3
- Priit Adler3
- Toni Hermoso Pulido3
- Annabel Cansdale2
- Dr Euan McDonnell2
- Dr Eva Caamano-Gutierrez2
- Dr John Heap2
- Emma Rand2
- Evelyn Greeves2
- Javi Conejero2
- Jorge Buenabad-Chavez2
- Korbinian Bösl2
- Lars Juhl Jensen2
- Liverpool Computational Biology Facility (CBF)2
- Luca Cozzuto2
- Sarah Forrester2
- University of Liverpool2
- Alexandros C. Dimopoulos1
- Anna Delgado Tejedor1
- Björn Johansson1
- Chris Taylor1
- Dr Jordan Tzvetkov1
- Emilio Palumbo1
- Erik Hedman1
- Espen Åberg1
- F. Abascal, J. Aguirre, E. Andrés-León, D. Bajic, D. Baú, J. A. Bueren-Calabuig, Á. Cortés-Cabrera, I. Dotu, J. M. Fernández, H. G. D. Santos, B. Garcı́a-Jiménez, R. Guantes, I. Irisarri, N. Jiménez-Lozano, J. Klett, R. Méndez, A. Morreale, A. Pascual-Garcı́a, A. Perona, A. Sebastian, M. Stich, S. Tarazona, I. Yruela y R. Zardoya1
- Fabian Andrade Lozano1
- Federico Bianchini1
- Gabriella Rustici1
- Geraldine Van der Auwera1
- Helen V. Cook1
- Hélène Chiapello1
- Illimar Rekand1
- Johann Confais1
- Jonathan Manning1
- Jose Espinosa-Carrasco1
- Julia Ponomarenko1
- Julien Seiler1
- Liis Kolberg1
- Lionel Maurel1
- Lucas Levassor1
- MGnify team1
- Manuel Lera-Ramirez1
- Marcel Ribeiro-Dantas1
- Maria Victoria ...1
- Marilin Moor1
- Markus Englund1
- Martin Reczko1
- Michelle Brazas1
- Monique Zahn1
- Nadezhda T. Doncheva1
- Nazeefa Fatima1
- Nicole Vasilevsky1
- Paulette Lieby1
- Peilun Xie1
- Plazi1
- Raf Winand1
- Sarah Bonnin1
- Stefanie Lueck1
- Thomas Denecker1
- Uku Raudvere1
- Wandrille Duchemin1
- allegra.via Via1
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- Contributor
- Emma Barnes2
- Gautier Sarah2
- James Chong2
- Jean-François Dufayard2
- Software Sustainability Institute2
- University of York2
- Antonia Taiani1
- BjornFJohansson1
- Diana Pilvar1
- Elin Kronander1
- Emily Angiolini1
- Filipa Pereira1
- Hélène Chiapello1
- INRAE1
- Jamie Edwards1
- John "Scooter" Morris1
- Julia Ponomarenko1
- Julien Seiler1
- MGnify team1
- Mattias Strömberg1
- Niclas Jareborg1
- Nurlan Kerimov1
- Paul Yorke1
- Paulette Lieby1
- Portada: Enrique Sahagún1
- Stephan Nylinder1
- Tarcisio Mendes de Farias1
- Thomas Denecker1
- Vassilios Ioannidis1
- Wolmar Nyberg Åkerström1
- Yvonne Kallberg1
- amijalis1
- bruno2git1
- dgruano1
- hgbrian1
- hiyama3411
- hristog1
- jan-glx1
- jxu101
- louisabraham1
- manulera1
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- Resource type
- lessons20
- e-learning17
- Presentation13
- Training materials7
- Slides6
- Course materials5
- Tutorial5
- Bioinformatics4
- Coding4
- Video4
- Computational Biology3
- Recorded webinar3
- Computer Science2
- Documentation2
- Education2
- Learning pathway2
- Programming2
- Scripts2
- course materials2
- API reference1
- Book1
- Data Science1
- E-Learning1
- Machine Learning1
- Online material1
- Slidedeck1
- Transcriptomics1
- examples1
- online course1
- tutorials1
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- Related resource
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Introduction to the EGA and sharing sensitive data1
- REPET image Docker1
- Slides for Introduction to statistics with R 1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- The Carpentries1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
- pydna1
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- Node
- EMBL-EBI17
- Estonia5
- Spain5
- Denmark4
- France4
- Norway3
- Switzerland2
- United Kingdom2
- Belgium1
- Germany1
- Greece1
- Portugal1
- Slovenia1
- Sweden1
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- Collection
- ELIXIR Biodiversity Community11
- ELIXIR Federated Human Data Community2
- VEIS - Value of the EGA for Industry and Society2
- Elements of Data Management1
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- Status
- Active48
- Archived1
- Under development1
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