Materials - TeSS (Training eSupport System)

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- Scientific topic
- Exomes124
- Genome annotation124
- Genomes124
- Genomics124
- Personal genomics124
- Synthetic genomics124
- Viral genomics124
- Whole genomes124
- Chromosome walking34
- Clone verification34
- DNA-Seq34
- DNase-Seq34
- High throughput sequencing34
- High-throughput sequencing34
- NGS34
- NGS data analysis34
- Next gen sequencing34
- Next generation sequencing34
- Panels34
- Primer walking34
- Sanger sequencing34
- Sequencing34
- Targeted next-generation sequencing panels34
- Breakend assembly20
- Genome assembly20
- Genomic assembly20
- MicroRNA sequencing20
- RNA sequencing20
- RNA-Seq20
- RNA-Seq analysis20
- Sequence assembly (genome assembly)20
- Small RNA sequencing20
- Small RNA-Seq20
- Small-Seq20
- Transcriptome profiling20
- Variant pattern analysis20
- WTSS20
- Whole transcriptome shotgun sequencing20
- miRNA-seq20
- Comparative transcriptomics17
- Transcriptome17
- Transcriptomics17
- Functional genome annotation12
- Metagenome annotation12
- Structural genome annotation12
- Comparative genomics9
- Sequence read processing9
- DNA methylation7
- Data rendering7
- Data visualisation7
- Epigenetics7
- Histone modification7
- Methylation profiles7
- Genetic variation analysis6
- Genetic variation annotation6
- Metagenomics6
- Sequence variation analysis6
- Shotgun metagenomics6
- Single-cell genomics6
- Single-cell sequencing6
- Transcript variant analysis6
- Variant analysis6
- Bayesian methods5
- Biostatistics5
- Descriptive statistics5
- Gaussian processes5
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- Markov processes5
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- Population genetics5
- Probabilistic graphical model5
- Probability5
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- Statistics and probability5
- Algorithms4
- ChIP-exo4
- ChIP-seq4
- ChIP-sequencing4
- Chip Seq4
- Chip sequencing4
- Chip-sequencing4
- Computer programming4
- Data structures4
- Epidemiology4
- Programming languages4
- Public health4
- Public health and epidemiology4
- Software development4
- Software engineering4
- Active learning3
- Bioinformatics3
- Content management3
- Database management3
- Document management3
- Ensembl learning3
- File management3
- Integrative omics3
- Kernel methods3
- Knowledge representation3
- Machine learning3
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- Standard database or policy
- Genomics England | PanelApp1
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- Content provider
- Glittr.org77
- ERGA Knowledge Hub41
- IFB French Institute of Bioinformatics19
- Australian BioCommons14
- ELIXIR Portugal5
- Centre for Genomic Regulation (CRG)3
- GOBLET2
- COG-Train1
- Danish National Health Data Science Sandbox1
- ELIXIR Slovenia1
- EOSC4Cancer1
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- Keyword
- Genomics
- R331
- Transcriptomics160
- Python149
- RNA-seq127
- Next generation sequencing119
- Data management104
- Bioinformatics98
- Statistics80
- FAIR data77
- FAIR69
- Galaxy Server administration68
- Machine learning68
- Reproducibility68
- Data science67
- Single-cell sequencing61
- Unix/Linux61
- Proteomics56
- jupyter-notebook55
- Workflows54
- Data visualization51
- Version control51
- Foundations of Data Science50
- Variant analysis50
- data management48
- biodiversity47
- metagenomics47
- Development in Galaxy45
- Statistics and machine learning45
- Genome assembly43
- Galaxy41
- Single Cell41
- microgalaxy41
- training39
- Metagenomics38
- General36
- Genome annotation36
- Rare Diseases & Research36
- FAIR Data, Workflows, and Research33
- QC33
- Microbiome32
- Nextflow32
- Genome Annotation31
- Ecology30
- programming30
- Assembly28
- FAIR principles28
- Genome28
- Metadata28
- Molecular28
- Alignment27
- Contributing to the Galaxy Training Material27
- Data analysis27
- Phylogenetics27
- Using Galaxy and Managing your Data27
- biohackaton 201827
- Epigenetics26
- Long read sequencing26
- RDM26
- bioinformatics26
- Docker25
- Data reuse24
- Annotation23
- Containerization23
- data stewardship23
- ChIP-seq22
- High performance computing22
- Metabolomics22
- Microbiology22
- Shiny22
- NGS21
- Open Science21
- RNA-Seq21
- Spatial transcriptomics21
- ansible21
- metadata21
- reproducible research21
- BAM20
- FASTQ20
- Research Data Management20
- life-sciences20
- sensitive data19
- CfRR19
- Cloud computing19
- Differential-expression19
- FAIR Data19
- Imaging19
- Pre-processing19
- REDCap19
- Sequence analysis19
- git-gat19
- scientific computing19
- Artificial intelligence18
- Comparative genomics18
- Data sharing18
- Programming18
- Variant Analysis18
- interactive-tools18
- transcriptomics18
- work-in-progress18
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- Competency level
- Not specified158
- Beginner5
- Intermediate5
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- Licence
- License Not Specified94
- Creative Commons Attribution 4.0 International40
- MIT License12
- GNU General Public License v3.0 only11
- Creative Commons Zero v1.0 Universal4
- CeCILL Free Software License Agreement v2.13
- Creative Commons Attribution Non Commercial 4.0 International1
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- Creative Commons Attribution Non Commercial Share Alike 4.0 International1
- Creative Commons Attribution Share Alike 4.0 International1
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- Target audience
- Academia/ Research Institution5
- Industry5
- Non-Profit Organisation5
- Healthcare4
- Clinical Scientists2
- Life Science Researchers2
- Researchers2
- Bioinformatician1
- Biologists1
- Clinicians1
- Data Access Committeses from the EGA1
- Graduate students1
- Master students1
- PhD Students1
- Post docs1
- Postgraduate students1
- Professors1
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA1
- Researchers and bioinformaticians involved in the VEIS project1
- Students1
- beginner bioinformaticians1
- clinicians and informaticians interested in cancer genetics1
- healthcare professionals1
- life scientists1
- postgrad1
- scientific researchers, public health professionals and clinicians1
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- Author
- The Gulbenkian Training Programme in Bioinformatics9
- Data Carpentry6
- bioinformatics.ca6
- Canadian Bioinformatics Workshops3
- NBIS - National Bioinformatics Infrastructure Sweden3
- SIB Swiss Institute of Bioinformatics3
- Bioinformatics, Rockefeller University2
- Boas Pucker2
- Ihsan, Maira2
- Nelson, Tiffanie2
- Paupério, Joana2
- The Carpentries Lab2
- Alli Black1
- Andries Marees1
- Annabel Cansdale1
- Applied Genomics1
- Baker, Naomi1
- Barugahare, Adele1
- Biocore@CRG1
- Biodiversity Genomics Academy 20231
- BiotrAIn1
- Bretaudeau, Anthony1
- CRUK CI Bioinformatics Core1
- Celia van Gelder1
- Christophe Antoniewski1
- Computational Genomics with R1
- Computational Metagenomics1
- Degnan, Bernie1
- Degnan, Sandie1
- Deshpande, Nandan1
- Dipannita Ghosh1
- Ellen McDonagh1
- Elodie Girard1
- Emma Rand1
- Eric C. Anderson1
- Evelyn Greeves1
- Fred Hutch Data Science Lab1
- Freeberg, Mallory1
- Functional Genomics Laboratory1
- Galaxy Project1
- Hall, Grace1
- Harrison, Paul1
- Hofmann, Oliver1
- Hogg, Carolyn1
- Holliday, Jess1
- IB-ULFRI1
- Jan Paces1
- Jan Taylor1
- Jorge Buenabad-Chavez1
- Katharina Hoff1
- Kristyna Kupkova1
- Kummerfeld, Sarah1
- Lee, Justin1
- Leonardo Collado-Torres1
- Mahul Chakraborty1
- Makunin, Igor1
- Melbourne Bioinformatics1
- Mike Lee1
- Morgan, Steven1
- N.Lapalu1
- Nanopore for Educators1
- Nauheimer, Lars1
- Nina Overgaard Therkildsen1
- Nisselle, Amy1
- Olivier Inizan1
- Oslo Centre for Biostatistics and Epidemiology1
- Our core educator team can be found on our course page.1
- Pachter Lab1
- Papenfuss Lab1
- Patterson, Andrew1
- Perry, Andrew1
- Pope, Bernie1
- Python club at University of Algarve1
- Rane, Rahul1
- Raphael Mourad1
- Rasche, Helena1
- Reames, Benjamin1
- Rebecca Foulger1
- Rob Waterhouse1
- SLU Global Bioinformatics Centre1
- Sarah Forrester1
- Schmidt-Lebuhn, Alexander1
- SciLifeLab-Training1
- St. Jude Children's Research Hospital1
- Stephen Turner1
- Steven M. Van Belleghem1
- Syed, Mustafa1
- Taouk, Kamile1
- Taylor, Mark1
- Teaching materials at the Harvard Chan Bioinformatics Core1
- Thang, Mike1
- The Griffith Lab1
- The McDonnell Genome Institute1
- Vissers, Joep1
- Voelker, Julia1
- Wellcome Connecting Science1
- Williams, Sarah1
- Wong, Nick1
- Wong-Erasmus, Marie1
- cambiotraining1
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- Contributor
- Canadian Bioinformatics Workshops8
- Erin Becker8
- François Michonneau8
- Toby Hodges8
- maneesha8
- Jason Williams7
- Tracy Teal7
- Zhian N. Kamvar7
- Bianca Peterson6
- C. Titus Brown6
- Taylor Reiter6
- Amanda Charbonneau5
- Dan Kerchner5
- Mark Fernandes5
- Rayna M Harris5
- Robert Davey5
- Anita Schürch4
- Erik Garrison4
- Nelly Sélem4
- Pete4
- Sarah Stevens4
- The Gulbenkian Training Programme in Bioinformatics4
- Annajiat Alim Rasel3
- Bob Freeman3
- Brittany N. Lasseigne, PhD3
- Bérénice Batut3
- Daniel Faria3
- Daniel Neves3
- Daniel Sobral3
- David Pérez-Suárez3
- Fotis E. Psomopoulos3
- Hilmar Lapp3
- JCSzamosi3
- Jemma Stachelek3
- Kari L. Jordan, PhD3
- Katrin Leinweber3
- Michael R. Crusoe3
- Mikko Rautiainen3
- Naupaka Zimmerman3
- Niclas Jareborg3
- Paula Andrea Martinez3
- Sam Nooij3
- Sarah Brown3
- murraycadzow3
- zhibinlu3
- Aaron E. Jaime2
- Abby Cabunoc Mayes2
- AbrahamAvelar2
- Ahmed Moustafa2
- Alana Alexander2
- Allen Lee2
- Andrew Sanchez2
- Andy Boughton2
- Aziz Khan2
- Boas Pucker2
- Brandon Curtis2
- Charlie Barclay2
- Chris Miller2
- Christina K.2
- CladoniaRang2
- Clara2
- Claudia Zirión Martínez2
- Darian2
- David Mawdsley2
- Dinindu Senanayake2
- EWheeler1232
- Edmund Miller2
- EvanWill2
- Finlay Maguire2
- Flavio Lombardo2
- Gabriel A. Devenyi2
- Geert van Geest2
- Graeme Grimes2
- Hadrien Gourlé2
- Ian Lee2
- Idowu Olawoye2
- J. Abel Lovaco2
- Jacques Dainat2
- Jared Simpson2
- Jeff Oliver2
- JesseKerkvliet2
- Joel Nothman2
- Jon Pipitone2
- Jonah Duckles2
- Karen Cranston2
- Karen Word2
- Kartik Singhal2
- Katie Anne Mills2
- Kelsy Cotto2
- Kevin Weitemier2
- Lex Nederbragt2
- M. Foos2
- Mariam Khanfar2
- Mateusz Kuzak2
- Matt Paul2
- Matthew Kweskin2
- Maxim Belkin2
- Michael Hansen2
- Michael Love2
- Miguel Cardoso2
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- Resource type
- Documentation5
- Exercise5
- Handout5
- Scripts5
- Presentation3
- Video3
- Training materials2
- course materials2
- FREE online course1
- Online material1
- Recorded webinar1
- Slides1
- e-learning1
- knowledgebase1
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- Related resource
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genomics England PanelApp1
- Introduction to the EGA and sharing sensitive data1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
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- Node
- Switzerland118
- France20
- Portugal5
- Spain3
- Czech Republic1
- Slovenia1
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- Collection
- ELIXIR Federated Human Data Community3
- VEIS - Value of the EGA for Industry and Society3
- ELIXIR Biodiversity Community1
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- Status
- Active18
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