Training materials
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e-learning
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome assembly binning metagenomics microgalaxy -
e-learning
Remove contamination and host reads
• BeginnerMetagenomics Microbial ecology Microbiome host-removal metagenomics microgalaxy preprocessing -
exercise, slides, tutorial
RNA-seq Analysis Using Galaxy en Français
bioinformatics microbiome 16S metagenomics R tutorial slides
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exercise, slides, tutorial
Advanced Microbiome Analysis Course Materials
bioinformatics microbiome 16S metagenomics R tutorial slides
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e-learning
Indexing and profiling microbes with MetaSBT
• BeginnerMetagenomics Microbial ecology Taxonomy Microbiome diversity metagenomics taxonomic profiling -
WORKSHOP SERIES: Submitting sequencing data and genome assemblies to the European Nucleotide Archive
Bioinformatics Data submission FAIR Genomics eDNA metagenomics Genome assembly and annotation
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Course materials
Applied Metagenomics - AM22 (October 11-14, 2022)
•• IntermediateMetagenomics Metagenomic sequencing Metagenomics metagenomics Genomic data Genomic sequences genomics Taxonomic concepts Genome assembly Genome Assembly … -
Course materials
Applied Metagenomics - AM21 (November 1-5, 2021)
•• IntermediateMetagenomics Metagenomic sequencing Metagenomics metagenomics Genomic data Genomic sequences genomics Taxonomic concepts Genome assembly Genome Assembly … -
e-learning
QIIME 2 Moving Pictures
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding Microbiome diversity metagenomics microgalaxy taxonomic profiling -
e-learning
Calculating α and β diversity from microbiome taxonomic data
• BeginnerMetagenomics Microbial ecology Microbiome diversity metagenomics