Training materials
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Nicolas Delhomme and Bastian Schiffthaler
RNA-Seq FASTQ GFF3 BAM Populus-tremula RNA-Seq Pre-processing QC Alignment Annotation …
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Expression estimation
RNA-Seq GFF3 BAM Populus-tremula RNA-Seq Expression-estimation
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Example “Variant Calling”
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Mapping Quality Control
Alignment BAM QC
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Day 3 - RNA-Seq Analysis
QC Exploratory-analysis Differential-expression Statistical-model Pre-processing
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RNA-Seq
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ChIP-Seq
ChIP-Seq Experimental-design QC ChIP-Seq-QC Data-format Alignment Peak-calling Differential-binding Annotation
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Tutorial
RNA-Seq FASTQ GFF3 BAM Populus-tremula RNA-Seq Pre-processing QC Alignment Annotation …
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Prerequisite
Statistics and probability Unix Linux R-programming Statistics
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Intro to R and Bioconductor
Prerequisite R-programming