Materials - TeSS (Training eSupport System)

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- Algorithms107
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- Bottom-up proteomics41
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- Data analysis11
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- HISAT27
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- gffread6
- DESeq25
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- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
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- kraken25
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- bx-python4
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- Apollo3
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- Clustal 1.8 (Clustal W, Clustal X)3
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- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- QualiMap3
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- SeqCode3
- SortMeRNA3
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- bed to protein map3
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- FAIRsharing3
- European Nucleotide Archive2
- Ontology Lookup Service2
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- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- Bioschemas1
- Cellosaurus1
- Common Workflow Language1
- FAIRtracks1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- Minimum Information about Plant Phenotyping Experiment1
- ModelArchive1
- Research Object Crate1
- Resource Identification Portal 1
- Schema.org1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
- data.eNanoMapper.net1
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- GTN707
- Australian BioCommons86
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- ELXIR-UK DaSH54
- ERGA Knowledge Hub49
- DTLS - Dutch Techcentre For Life Sciences33
- Canadian Bioinformatics Workshops26
- Coding for Reproducible Research (CfRR)19
- ELIXIR Portugal16
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- VIB Training & Conferences13
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- ELIXIR Estonia10
- PerMedCoE6
- Barcelona Supercomputing Center (BSC)4
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- IFB French Institute of Bioinformatics4
- Novo Nordisk Foundation Center for Protein Research3
- University of Edinburgh3
- ELIXIR: The Czech Republic Node2
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- Software Sustainability Institute2
- Centre for Digital Life Norway1
- Cloud-SPAN1
- DeiC – Danish e-Infrastructure Cooperation1
- Department of Bioinformatics - BiGCaT, Maastricht University1
- EOSC4Cancer1
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- Pattern Institute1
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- University of Cambridge Bioinformatics Training1
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- Keyword
- Bioinformatics68
- Galaxy Server administration68
- jupyter-notebook55
- Foundations of Data Science50
- Transcriptomics49
- biodiversity46
- Development in Galaxy45
- Statistics and machine learning45
- Proteomics42
- Single Cell41
- microgalaxy41
- Genomics40
- Data management34
- FAIR Data, Workflows, and Research33
- Genome Annotation31
- Ecology30
- FAIR data30
- Microbiome30
- data management30
- Contributing to the Galaxy Training Material27
- Using Galaxy and Managing your Data27
- Assembly25
- Data reuse24
- FAIR24
- metagenomics24
- FAIR principles23
- R23
- Workflows22
- RDM21
- ansible21
- programming20
- CfRR19
- FAIR Data19
- Metadata19
- git-gat19
- reproducible research19
- scientific computing19
- Imaging18
- Open Science18
- Variant Analysis18
- interactive-tools18
- work-in-progress18
- Climate17
- Data analysis17
- Teaching and Hosting Galaxy training17
- elixir17
- Data sharing16
- Genome annotation16
- HemaFAIR16
- Introduction to Galaxy Analyses16
- Reproducibility16
- data stewardship16
- fair16
- jbrowse116
- sensitive data15
- Epigenetics15
- Next generation sequencing15
- REDCap15
- earth-system15
- gmod15
- prokaryote15
- Online Repository14
- RNA-seq14
- Data mining13
- Metabolomics13
- Python13
- Research Data Management13
- Sequence analysis13
- Deep learning12
- Machine learning12
- assembly12
- cyoa12
- metadata12
- paper-replication12
- Data management planning11
- Analysis11
- European research projects11
- MIGHTS11
- Nextflow11
- REMBI11
- ai-ml11
- covid1911
- Evolution10
- Image segmentation10
- Version control10
- eukaryote10
- label-free10
- nanopore10
- ocean10
- plants10
- workflows10
- DDA9
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- one-health9
- Computational chemistry8
- Galaxy Community Building8
- Genome assembly8
- Single-cell sequencing8
- Variant analysis8
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- Competency level
- Beginner694
- Not specified357
- Intermediate165
- Advanced22
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- Licence
- Creative Commons Attribution 4.0 International
- License Not Specified2521
- Creative Commons Attribution Share Alike 4.0 International144
- MIT License130
- GNU General Public License v3.0 only50
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International45
- Creative Commons Zero v1.0 Universal43
- Creative Commons Attribution Non Commercial Share Alike 4.0 International41
- Other (Not Open)24
- Apache License 2.017
- Other (Non-Commercial)15
- BSD 3-Clause "New" or "Revised" License14
- Creative Commons Attribution Non Commercial 4.0 International12
- Other (Attribution)6
- Creative Commons Attribution 1.0 Generic5
- CeCILL Free Software License Agreement v2.13
- Creative Commons Attribution No Derivatives 4.0 International3
- Other (Open)3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- GNU General Public License v2.0 only2
- Academic Free License v3.01
- Creative Commons Attribution 2.0 Generic1
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- Do What The F*ck You Want To Public License1
- Open Data Commons Attribution License v1.01
- The Unlicense1
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- Target audience
- Students570
- Galaxy Administrators113
- Instructors52
- Researchers35
- Scientific community26
- PhD candidate24
- Data stewards20
- Academia/ Research Institution16
- Data Scientist16
- Data managers16
- Industry16
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- Healthcare13
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- Biologists10
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- Clinicians7
- Master students6
- PhD candidates6
- Beginner5
- Life scientists with programming skills5
- PI5
- bioinformaticians5
- data stewards5
- project manager5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Bioinformatician4
- Data Managers4
- Graduate Students4
- Post Docs4
- Biologists with little or no prior computational experience3
- Data Scientists3
- Life Scientists3
- PhD students3
- Scientists3
- data steward / data manager3
- Academics2
- Beginners2
- Bench biologists2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Chemists2
- Computational biologists2
- Curators2
- Data Steward2
- Database users2
- Graduate students2
- Industry Professionals2
- Post-Doctoral Fellows2
- Postdocs and Staff members2
- Professor2
- Research scientists2
- Trainers2
- life science researchers2
- life scientists2
- plant researchers2
- policy officer2
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Clinical Scientists1
- DMP writers1
- Data Manager1
- Data scientists1
- Developers wanting to distribute their MPI dependent software1
- ECR1
- EIP members1
- ELIXIR members1
- Early Career Researcher1
- General Interest1
- Graduates1
- HPC system maintainers wanting to enable MPI containers1
- IT support1
- Imaging Core Facility Staff1
- Librarians1
- Life scientists1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Modellers1
- Node Coordinators1
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research1
- OMERO trainers1
- OMERO users1
- PhD1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics.1
- Policy makers1
- Post docs1
- PostDocs1
- Postdoctoral Researchers1
- Postdoctoral researchers1
- Principal Investigators (PIs)1
- Researcher in life sciences1
- Student1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- Support Staff1
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- Author
- Helena Rasche127
- Bérénice Batut111
- Saskia Hiltemann65
- Björn Grüning49
- Simon Gladman33
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Yvan Le Bras28
- Nate Coraor27
- Subina Mehta27
- Donat Agosti25
- John Chilton25
- Julia Giora25
- Nicola Soranzo25
- Plazi Verein25
- SIB Swiss Institute of Bioinformatics25
- The Carpentries23
- Fotis E. Psomopoulos21
- Saskia Lawson-Tovey20
- Anne Fouilloux19
- Coding for Reproducible Research Initiative19
- Marie Josse19
- Wendi Bacon19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper17
- Mehmet Tekman17
- Paul Zierep16
- The Gulbenkian Training Programme in Bioinformatics16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Julia Jakiela14
- Pratik Jagtap14
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- James Johnson13
- Katherine Do13
- Maria Doyle13
- Mijke Jetten13
- Monique Zahn13
- Wolfgang Maier13
- Marius van den Beek12
- Melanie Föll12
- Simon Bray12
- Anup Kumar11
- Khaled Jum'ah11
- Pavankumar Videm11
- Daniel Blankenberg10
- Martin Čech10
- Anika Erxleben9
- Celia van Gelder9
- Egon Willighagen9
- Praveen Kumar9
- Anne Pajon8
- Avans Hogeschool8
- Diana Pilvar8
- Emma Leith8
- Fred Hutch Data Science Lab8
- Joachim Wolff8
- Kaivan Kamali8
- Lucille Delisle8
- Robert Andrews8
- Sara Morsy8
- Stéphanie Robin8
- Timothy J. Griffin8
- Alex Ostrovsky7
- Alexander Botzki7
- Alexandre Cormier7
- Anna Syme7
- Beatriz Serrano-Solano7
- Branka Franicevic7
- Christopher Barnett7
- Diana Chiang Jurado7
- Erwan Corre7
- Florian Christoph Sigloch7
- Gildas Le Corguillé7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
- Nadia Goué7
- Patricia Palagi7
- Ray Sajulga7
- Allegra Via6
- Andrew Mason6
- Beecroft, Sarah6
- Clemens Blank6
- Coline Royaux6
- Deshpande, Nandan6
- ELIXIR Goblet Train the Trainers6
- Jeremy Goecks6
- Junhao Qiu6
- Morgan Howells6
- Paulo Cilas Morais Lyra Junior6
- Philippe Rocca-Serra6
- Raphael Mourad6
- Solenne Correard6
- Valentin Loux6
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- Contributor
- Saskia Hiltemann590
- Helena Rasche501
- Björn Grüning419
- Bérénice Batut256
- Nicola Soranzo171
- Martin Čech128
- Anthony Bretaudeau106
- Cristóbal Gallardo104
- Niall Beard90
- Wendi Bacon77
- Nate Coraor70
- Armin Dadras64
- Gildas Le Corguillé63
- Marius van den Beek60
- William Durand59
- Simon Gladman53
- Beatriz Serrano-Solano48
- Teresa Müller48
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras44
- Pavankumar Videm40
- Robert Andrews40
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Munazah Andrabi34
- Anup Kumar32
- Simon Bray28
- Subina Mehta28
- Anne Fouilloux24
- Donny Vrins24
- Maria Doyle23
- Peter van Heusden23
- Julia Jakiela21
- Bazante Sanders19
- Leonid Kostrykin19
- Anton Nekrutenko18
- Tristan Reynolds18
- Deepti Varshney17
- Khaled Jum'ah17
- Paul Zierep17
- Pratik Jagtap17
- Delphine Lariviere16
- Geert van Geest16
- Petros Kountouris16
- David López14
- Marisa Loach14
- Mira Kuntz14
- Mélanie Petera14
- Matthias Bernt13
- Timothy J. Griffin13
- Candace Savonen12
- Daniela Schneider12
- Pablo Moreno12
- Carrie Wright11
- Dave Clements11
- Diana Chiang Jurado11
- Gianmauro Cuccuru11
- Katarzyna Kamieniecka11
- Stéphanie Robin11
- jhudsl-robot11
- Wandrille D.10
- actions-user10
- Anna Syme9
- John Chilton9
- Kate Isaac9
- Mallory Freeberg9
- Paul De Geest9
- Alexandre Cormier8
- Amirhossein Naghsh Nilchi8
- Florian Heyl8
- Kaivan Kamali8
- Melissa Burke8
- Solenne Correard8
- Verena Moosmann8
- Allyson Lister7
- Christopher Barnett7
- Daniel Sobral7
- Hans-Rudolf Hotz7
- Katherine Do7
- Morgan Howells7
- Tomas Klingström7
- Bert Droesbeke6
- Catherine Bromhead6
- Clemens Blank6
- Ekaterina Polkh6
- Enis Afgan6
- Florian Christoph Sigloch6
- Linelle Abueg6
- Paulo Cilas Morais Lyra Junior6
- Riccardo Massei6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Andrea Bagnacani5
- Clea Siguret5
- Deepak Tanwar5
- Elizabeth Humphries5
- Fabio Cumbo5
- John Davis5
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- e-learning551
- slides186
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- Presentation47
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- lessons40
- Training materials32
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- exercise26
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- video21
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- Documentation16
- Handout16
- Lecture16
- Scripts16
- Slides11
- Tutorial11
- Online material4
- PDF4
- Webinar4
- tutorials4
- Recorded webinar3
- course materials3
- slideck/ presentation3
- Course materials2
- Learning pathway2
- Series of videos2
- online course2
- youtube video2
- Carpentries style curriculum1
- Coding1
- Computational Biology1
- E-Learning1
- Jupyter notebooks1
- Open educational resource1
- Poster1
- Recording1
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- additional reading1
- case studies1
- didactic activities1
- hackathon1
- handbook1
- implementation guidelines1
- scripts1
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- Related resource
- Associated Training Datasets326
- Associated Workflows305
- Jupyter Notebook (with Solutions)53
- Jupyter Notebook (without Solutions)53
- Quarto/RMarkdown Notebook6
- DMPonline2
- DisProt2
- Research Data Management in Life Sciences2
- Slides2
- Workshop recording2
- ARROWSMITH1
- Data Stewardship Wizard1
- Data Visualisation (theory) 1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- R basics1
- RDMkit1
- RNA-seq data package1
- Ready For BioData Management?1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
- recorded guidance on how to install a SciNote account1
- recorded intro to hackathon1
- recorded presentation on integration of ELNs in nanosciences1
- seq-seq-pan1
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- Switzerland140
- United Kingdom63
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- Denmark4
- Spain4
- Sweden3
- Finland2
- Germany2
- Italy2
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community15
- RDMbites: REDCap14
- RDMbites: Data management essentials13
- RDMbites: Image data10
- Elements of Data Management7
- PINK project7
- SARS-CoV-2 : Studying a new virus5
- RDMbites: Equality, Diversity, Inclusion and Justice in RDM4
- RDMbites: Sensitive data4
- ELIXIR SIS-Containers - collection of training materials3
- RDMbites: Sequencing data3
- ELIXIR Systems Biology Community: training events and materials2
- ELIXIR Toxicology Community2
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Federated Human Data Community1
- PHENotyping and EnviroTyping (PHENET training collection)1
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- Under development2
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