Materials - TeSS (Training eSupport System)

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- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
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- QualiMap3
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- European Nucleotide Archive2
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- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- Bioschemas1
- Cellosaurus1
- Common Workflow Language1
- FAIRtracks1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- Minimum Information about Plant Phenotyping Experiment1
- ModelArchive1
- Research Object Crate1
- Resource Identification Portal 1
- Schema.org1
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- GTN710
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- Coding for Reproducible Research (CfRR)19
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- PerMedCoE6
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- University of Edinburgh3
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- Department of Bioinformatics - BiGCaT, Maastricht University1
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- Keyword
- Bioinformatics69
- Galaxy Server administration68
- jupyter-notebook55
- Foundations of Data Science50
- Transcriptomics50
- biodiversity46
- Development in Galaxy45
- Statistics and machine learning45
- Proteomics42
- Single Cell42
- microgalaxy41
- Genomics40
- Data management34
- FAIR Data, Workflows, and Research33
- Genome Annotation31
- Ecology30
- FAIR data30
- Microbiome30
- data management30
- Contributing to the Galaxy Training Material27
- Using Galaxy and Managing your Data27
- Assembly25
- Data reuse24
- FAIR24
- metagenomics24
- FAIR principles23
- R23
- Workflows23
- RDM21
- ansible21
- programming20
- CfRR19
- FAIR Data19
- Imaging19
- Metadata19
- git-gat19
- reproducible research19
- scientific computing19
- Open Science18
- Variant Analysis18
- interactive-tools18
- work-in-progress18
- Climate17
- Data analysis17
- Introduction to Galaxy Analyses17
- Teaching and Hosting Galaxy training17
- elixir17
- Data sharing16
- Genome annotation16
- HemaFAIR16
- Reproducibility16
- data stewardship16
- fair16
- jbrowse116
- sensitive data15
- Epigenetics15
- Next generation sequencing15
- REDCap15
- RNA-seq15
- earth-system15
- gmod15
- prokaryote15
- Online Repository14
- Research Data Management14
- Data mining13
- Metabolomics13
- Python13
- Sequence analysis13
- Deep learning12
- Machine learning12
- assembly12
- cyoa12
- metadata12
- paper-replication12
- Data management planning11
- Analysis11
- European research projects11
- MIGHTS11
- Nextflow11
- REMBI11
- ai-ml11
- covid1911
- Evolution10
- Image segmentation10
- Version control10
- eukaryote10
- label-free10
- nanopore10
- ocean10
- plants10
- workflows10
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- one-health9
- Computational chemistry8
- Galaxy Community Building8
- Genome assembly8
- Single-cell sequencing8
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- Competency level
- Beginner698
- Not specified359
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- Creative Commons Attribution 4.0 International
- License Not Specified2583
- Creative Commons Attribution Share Alike 4.0 International144
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- GNU General Public License v3.0 only50
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International45
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- Other (Not Open)24
- Apache License 2.018
- Other (Non-Commercial)15
- BSD 3-Clause "New" or "Revised" License14
- Creative Commons Attribution Non Commercial 4.0 International12
- Other (Attribution)6
- Creative Commons Attribution 1.0 Generic5
- CeCILL Free Software License Agreement v2.13
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- Artistic License 2.02
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- GNU General Public License v2.0 only2
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- Do What The F*ck You Want To Public License1
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- Target audience
- Students573
- Galaxy Administrators113
- Instructors52
- Researchers35
- Scientific community26
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- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
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- project manager4
- Biologists with little or no prior computational experience3
- PhD students3
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- data steward / data manager3
- Academics2
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- Bioinformaticians, Biologists with little or no prior computational experience.2
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- life science researchers2
- life scientists2
- plant researchers2
- policy officer2
- Anyone1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Beginner informatics1
- Bioinformatician, Bioanalysts1
- Clinical Scientists1
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- Librarians1
- Life scientists1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Modellers1
- Node Coordinators1
- Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research1
- OMERO trainers1
- OMERO users1
- PhD1
- PhD Students or young researchers in molecular biology and/or genetics with little or no background in bioinformatics.1
- PhD students in Genomics datascience1
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- Author
- Helena Rasche127
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- Saskia Hiltemann65
- Björn Grüning49
- Simon Gladman33
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Yvan Le Bras28
- Nate Coraor27
- Subina Mehta27
- SIB Swiss Institute of Bioinformatics26
- Donat Agosti25
- John Chilton25
- Julia Giora25
- Nicola Soranzo25
- Plazi Verein25
- The Carpentries23
- Anne Fouilloux21
- Fotis E. Psomopoulos21
- Saskia Lawson-Tovey20
- Coding for Reproducible Research Initiative19
- Marie Josse19
- Wendi Bacon19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper17
- Mehmet Tekman17
- Paul Zierep16
- The Gulbenkian Training Programme in Bioinformatics16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Julia Jakiela14
- Pratik Jagtap14
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- James Johnson13
- Katherine Do13
- Maria Doyle13
- Mijke Jetten13
- Monique Zahn13
- Wolfgang Maier13
- Anup Kumar12
- Marius van den Beek12
- Melanie Föll12
- Simon Bray12
- Khaled Jum'ah11
- Pavankumar Videm11
- Daniel Blankenberg10
- Martin Čech10
- Anika Erxleben9
- Celia van Gelder9
- Egon Willighagen9
- Praveen Kumar9
- Anne Pajon8
- Avans Hogeschool8
- Diana Chiang Jurado8
- Diana Pilvar8
- Emma Leith8
- Fred Hutch Data Science Lab8
- Joachim Wolff8
- Kaivan Kamali8
- Lucille Delisle8
- Robert Andrews8
- Sara Morsy8
- Stéphanie Robin8
- Timothy J. Griffin8
- Alex Ostrovsky7
- Alexander Botzki7
- Alexandre Cormier7
- Anna Syme7
- Beatriz Serrano-Solano7
- Beecroft, Sarah7
- Branka Franicevic7
- Christopher Barnett7
- Erwan Corre7
- Florian Christoph Sigloch7
- Gildas Le Corguillé7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
- Nadia Goué7
- Patricia Palagi7
- Ray Sajulga7
- Allegra Via6
- Andrew Mason6
- Clemens Blank6
- Coline Royaux6
- Deshpande, Nandan6
- ELIXIR Goblet Train the Trainers6
- Jeremy Goecks6
- Junhao Qiu6
- Morgan Howells6
- Paulo Cilas Morais Lyra Junior6
- Philippe Rocca-Serra6
- Raphael Mourad6
- Solenne Correard6
- Valentin Loux6
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- Saskia Hiltemann591
- Helena Rasche501
- Björn Grüning419
- Bérénice Batut256
- Nicola Soranzo171
- Martin Čech128
- Anthony Bretaudeau106
- Cristóbal Gallardo104
- Niall Beard90
- Wendi Bacon78
- Nate Coraor70
- Armin Dadras64
- Gildas Le Corguillé63
- Marius van den Beek61
- William Durand59
- Simon Gladman53
- Beatriz Serrano-Solano48
- Teresa Müller48
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras44
- Pavankumar Videm40
- Robert Andrews40
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Munazah Andrabi34
- Anup Kumar32
- Simon Bray28
- Subina Mehta28
- Anne Fouilloux24
- Donny Vrins24
- Maria Doyle23
- Peter van Heusden23
- Julia Jakiela21
- Leonid Kostrykin20
- Bazante Sanders19
- Anton Nekrutenko18
- Tristan Reynolds18
- Deepti Varshney17
- Geert van Geest17
- Khaled Jum'ah17
- Paul Zierep17
- Pratik Jagtap17
- Delphine Lariviere16
- Petros Kountouris16
- Daniela Schneider14
- David López14
- Marisa Loach14
- Mira Kuntz14
- Mélanie Petera14
- Diana Chiang Jurado13
- Matthias Bernt13
- Timothy J. Griffin13
- Candace Savonen12
- Pablo Moreno12
- Carrie Wright11
- Dave Clements11
- Gianmauro Cuccuru11
- Katarzyna Kamieniecka11
- Stéphanie Robin11
- jhudsl-robot11
- Wandrille D.10
- actions-user10
- Anna Syme9
- John Chilton9
- Kate Isaac9
- Mallory Freeberg9
- Paul De Geest9
- Alexandre Cormier8
- Amirhossein Naghsh Nilchi8
- Florian Heyl8
- Kaivan Kamali8
- Melissa Burke8
- Solenne Correard8
- Verena Moosmann8
- Allyson Lister7
- Christopher Barnett7
- Daniel Sobral7
- Enis Afgan7
- Hans-Rudolf Hotz7
- Katherine Do7
- Morgan Howells7
- Tomas Klingström7
- Bert Droesbeke6
- Catherine Bromhead6
- Clemens Blank6
- Deepak Tanwar6
- Ekaterina Polkh6
- Florian Christoph Sigloch6
- Linelle Abueg6
- Paulo Cilas Morais Lyra Junior6
- Riccardo Massei6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Andrea Bagnacani5
- Clea Siguret5
- Elizabeth Humphries5
- Fabio Cumbo5
- John Davis5
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- e-learning554
- slides186
- tutorial48
- Presentation46
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- lessons40
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- exercise26
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- video21
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- Handout16
- Lecture16
- Scripts16
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- Slides11
- Online material4
- PDF4
- Webinar4
- tutorials4
- Recorded webinar3
- course materials3
- slideck/ presentation3
- Course materials2
- Learning pathway2
- Series of videos2
- online course2
- youtube video2
- Carpentries style curriculum1
- Coding1
- Computational Biology1
- E-Learning1
- Jupyter notebooks1
- Open educational resource1
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- didactic activities1
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- implementation guidelines1
- scripts1
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- Related resource
- Associated Training Datasets328
- Associated Workflows307
- Jupyter Notebook (with Solutions)53
- Jupyter Notebook (without Solutions)53
- Quarto/RMarkdown Notebook6
- DMPonline2
- DisProt2
- Research Data Management in Life Sciences2
- Slides2
- Workshop recording2
- ARROWSMITH1
- Data Stewardship Wizard1
- Data Visualisation (theory) 1
- Event1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- R basics1
- RDMkit1
- RNA-seq data package1
- Ready For BioData Management?1
- Video Walkthrough of the Poster1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
- recorded guidance on how to install a SciNote account1
- recorded intro to hackathon1
- recorded presentation on integration of ELNs in nanosciences1
- seq-seq-pan1
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- Switzerland141
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community15
- RDMbites: REDCap14
- RDMbites: Data management essentials13
- RDMbites: Image data10
- Elements of Data Management7
- PINK project7
- SARS-CoV-2 : Studying a new virus5
- RDMbites: Equality, Diversity, Inclusion and Justice in RDM4
- RDMbites: Sensitive data4
- ELIXIR SIS-Containers - collection of training materials3
- RDMbites: Sequencing data3
- ELIXIR Systems Biology Community: training events and materials2
- ELIXIR Toxicology Community2
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Federated Human Data Community1
- PHENotyping and EnviroTyping (PHENET training collection)1
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