Materials - TeSS (Training eSupport System)

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- MicroRNA sequencing125
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- Annotation9
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- NCBI Gene4
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- BRENDA1
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- Integrated resource of protein families, domains and functional sites1
- Observational Medical Outcomes Partnership Standard Vocabulary1
- PRINTS1
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- Stress Knowledge Map1
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- The Human Metabolome Database1
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- Glittr.org510
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- Bioinformatics Visualization72
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- NGS Registry60
- ERGA Knowledge Hub55
- de.NBI35
- Data Carpentry34
- Khan Academy Statistics32
- BY-COVID31
- VIB Bioinformatics Core29
- Bioinformatics and Biomathematics Training Hub23
- Coursera19
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- CSC - IT Center for Science10
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- Genome 3D8
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- ELIXIR6
- NanoCommons6
- Centre for Genomic Regulation (CRG)5
- LIPID MAPS5
- UNIVERSE-HPC project5
- COG-Train4
- Department of Bioinformatics - BiGCaT, Maastricht University4
- Proteomics Academy4
- ELIXIR AAI3
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- CINECA PROJECT2
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- Keyword
- R199
- Genomics94
- Python79
- RNA-seq77
- Transcriptomics76
- Next generation sequencing67
- Statistics47
- Data management46
- Data science44
- Reproducibility38
- FAIR data35
- Rare Diseases & Research35
- Unix/Linux34
- Machine learning33
- Single-cell sequencing33
- Data visualization32
- training31
- Galaxy30
- Genome28
- Metagenomics28
- Molecular28
- QC28
- Version control28
- Alignment27
- Bioinformatics27
- biohackaton 201827
- Variant analysis24
- Workflows24
- FAIR22
- BAM20
- Phylogenetics20
- RNA-Seq20
- Differential-expression19
- Genome assembly19
- Pre-processing19
- Annotation18
- FASTQ18
- General18
- life-sciences18
- Containerization16
- NGS16
- R-programming16
- Docker15
- Anatomy Physiology and Atlases14
- Earlham Institute14
- Microbiology14
- Programming14
- Statistical-model14
- Exploratory-analysis13
- Pathway13
- Shell13
- Spatial transcriptomics13
- ChIP-Seq12
- Cloud computing12
- Introduction12
- Nextflow12
- health-informatics12
- Cells and Organisms11
- Europe PMC11
- Expression-estimation11
- Genome annotation11
- High performance computing11
- Introduction bioinformatics11
- Long read sequencing11
- genes and genomes11
- plant phenotyping11
- Extras10
- FAIRsharing10
- Feature-summarisation10
- Literature search10
- Python biologists10
- data management10
- databases10
- Comparative genomics9
- Git9
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- Rmarkdown9
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- next generation sequencing9
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- reproducibility9
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- GFF38
- Inferential statistics8
- PDBe8
- Pathways and Networks8
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- algorithms8
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- Not specified2330
- Beginner109
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- Creative Commons Attribution 4.0 International1242
- Creative Commons Attribution Share Alike 4.0 International144
- MIT License130
- GNU General Public License v3.0 only50
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International45
- Creative Commons Zero v1.0 Universal43
- Creative Commons Attribution Non Commercial Share Alike 4.0 International41
- Other (Not Open)24
- Apache License 2.018
- Other (Non-Commercial)15
- BSD 3-Clause "New" or "Revised" License14
- Creative Commons Attribution Non Commercial 4.0 International12
- Other (Attribution)6
- Creative Commons Attribution 1.0 Generic5
- CeCILL Free Software License Agreement v2.13
- Creative Commons Attribution No Derivatives 4.0 International3
- Other (Open)3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- GNU General Public License v2.0 only2
- Academic Free License v3.01
- Creative Commons Attribution 2.0 Generic1
- Creative Commons Attribution No Derivatives 2.0 Generic1
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- Do What The F*ck You Want To Public License1
- Open Data Commons Attribution License v1.01
- The Unlicense1
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- Target audience
- Researchers177
- PhD students170
- Biologists, Genomicists, Computer Scientists167
- Post-Doctoral Fellows161
- Clinicians121
- Graduate students85
- Graduate Students77
- Life Science Researchers45
- post-docs45
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- beginner bioinformaticians22
- bioinformaticians16
- Bench biologists15
- health professionals13
- Beginners13
- healthcare professionals12
- Health Care Professionals8
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- rare disease patients representatives7
- PhD6
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- Trainers5
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- postgrad5
- software developers, bioinformaticians5
- Bioinformaticians4
- Biomedical researchers4
- Clinical Scientists4
- General Interest4
- Laboratory technicians4
- Post Docs4
- Undergraduate students4
- Veterinarians4
- data stewards4
- General Physicians3
- PhD Students3
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
- data managers3
- medical students3
- postdoc3
- research software engineers and researchers writing code3
- researchers3
- Genomics data science PhD students2
- Healthcare2
- Master students2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
- PhD candidates2
- Postgraduate students2
- Researcher in life sciences2
- Toxicologists2
- biology and bioinformatics sophomore undergraduates2
- geneticists2
- genomics researchers2
- life scientists2
- plant researchers2
- postdoctoral researchers2
- scientific researchers, public health professionals and clinicians 2
- service administrators in organizations that want to make use of ELIXIR AAI 2
- Academia/ Research Institution1
- All postgraduates1
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities1
- Anyone wants to start using the Unix/Linux OS1
- Bachelor students1
- Beginner1
- Beginner informatics1
- Biochemists1
- Bioinformatician1
- Bioinformatics1
- Biologists with little or no prior computational experience1
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- Life sciences1
- Life scientists1
- Microbiologists1
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- Neurologists1
- Non-Profit Organisation1
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- Operators, developers and managers of bioinformatics resources1
- Paediatricians1
- PhD students, computer scientists, bioinformaticians and developers who need to maintain/extend existing tools or develop new tools for Galaxy. 1
- Policy makers1
- Postgraduate Students1
- Primary care doctors1
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- Author
- Martin Morgan96
- SIB Swiss Institute of Bioinformatics80
- The Carpentries Incubator52
- bioinformatics.ca35
- bebatut32
- bgruening32
- Michelle Brazas21
- Teaching materials at the Harvard Chan Bioinformatics Core21
- The Gulbenkian Training Programme in Bioinformatics20
- Terri Attwood18
- András Aszódi17
- Data Carpentry17
- shiltemann17
- NBIS - National Bioinformatics Infrastructure Sweden14
- Wandrille Duchemin14
- nekrut14
- Jenny Drnevich @jenny12
- Geert van Geest11
- Mathieu Bourgey11
- Various11
- Canadian Bioinformatics Workshops10
- Egon Willighagen10
- Paul Yorke10
- David Wishart9
- Jared Simpson9
- allegra.via Via9
- Bastian Schiffthaler @bastian8
- Boris Steipe8
- CRUK CI Bioinformatics Core8
- Eija Korpelainen8
- Malachi Griffith8
- Nicolas Delhomme @delhomme8
- pajanne8
- Maria Levchenko7
- Vincent Carey7
- Wolfgang Huber7
- joachimwolff7
- nsoranzo7
- stortebecker7
- Anna Poetsch6
- Bernardo Clavijo6
- Biocore@CRG6
- Dayane Araujo6
- Levi Waldron6
- Michael Lawrence6
- Michael Love6
- Philippe Le Mercier6
- Richard Smith-Unna6
- Simon Anders6
- Software Carpentry6
- erasche6
- erxleben6
- jmchilton6
- slugger706
- tnabtaf6
- Aidan Budd5
- Bioinformatics, Rockefeller University5
- Brian Haas5
- Deepak Tanwar5
- Fouad Yousif5
- Gary Bader5
- Guillaume Bourque5
- Hadley Wickham5
- Jeremy Cohen5
- Jessica Kirkpatrick [email protected]5
- Laurent Gatto5
- Lori Shepherd5
- Manuel Corpas5
- Maria Lehtivaara5
- Marie-Claude Blatter5
- MolSSI Education5
- Radhika Khetani @radhika5
- Robin Engler5
- Robin Haw5
- Sergio Martínez Cuesta5
- Sonali Arora5
- Steve Crouch5
- The Carpentries Lab5
- Thuong Van Du Tran5
- Will Hsiao5
- blankclemens5
- posit-conf-20235
- yvanlebras5
- Alex's Lemonade Stand Foundation4
- BioNT Training4
- Bori Mifsud4
- Computational Biology and Bioinformatics at UCLouvain4
- Elisabeth Gasteiger4
- Frederik Coppens @frcop4
- Gary Van Domselaar4
- Hervé Pagès4
- Kathi Zarnack4
- Mark Fernandes4
- Markus Müller4
- Mike Smith4
- Our core educator team can be found on our course page.4
- Rami Krispin4
- Sorana Morrissy4
- Stephanie Hicks4
- Various authors4
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- Contributor
- Toby Hodges80
- François Michonneau69
- Erin Becker63
- Zhian N. Kamvar59
- Katrin Leinweber54
- Raniere Silva53
- Tracy Teal53
- W. Trevor King52
- Andy Boughton51
- maneesha51
- Katie Anne Mills48
- Maxim Belkin48
- David Pérez-Suárez44
- Gabriel A. Devenyi44
- Canadian Bioinformatics Workshops43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Greg Wilson39
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Rémi Emonet38
- William L. Close38
- Rayna M Harris37
- Sarah Brown35
- Gerard Capes34
- trk31
- Renato Alves30
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Alex Whan27
- Christina K.27
- Paula Andrea Martinez26
- Michael Joseph25
- Anthony Gitter24
- João Rodrigues24
- Robert Davey22
- Sarah Stevens22
- Henry Schreiner20
- Hilmar Lapp20
- The Gulbenkian Training Programme in Bioinformatics19
- Paola Prieto18
- Aaron O'Leary17
- C. Titus Brown17
- Mine Cetinkaya-Rundel17
- Trevor Bekolay16
- Benson Muite15
- John Blischak15
- Annajiat Alim Rasel14
- Bianca Peterson14
- Lex Nederbragt14
- Radhika Khetani14
- Will Gammerdinger14
- Karen Word13
- Laurent Gatto13
- Mateusz Kuzak13
- Meeta Mistry13
- Wolmar Nyberg Åkerström13
- zhibinlu13
- Andrew Reid12
- Ethan White12
- JCSzamosi12
- Mark Fernandes12
- Ariel Rokem11
- Ivan Gonzalez11
- Jason Williams11
- Karen Cranston11
- Kilian Lieret11
- Kunal Marwaha11
- Miguel Cardoso11
- Pete11
- Pete Bachant11
- Trevor Keller11
- Amy Brown10
- Edward Wallace10
- Hugo Tavares10
- Jihe Liu10
- Kari L. Jordan, PhD10
- Stéphane Guillou10
- Taylor Reiter10
- YvonneKallberg10
- Alan O'Callaghan9
- Aleksandra Nenadic9
- Amanda Charbonneau9
- Anelda van der Walt9
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- Recorded webinar302
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- Tutorial97
- Course materials53
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- Webinar53
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- video16
- Poster14
- Slideshow12
- course materials12
- Training materials11
- Presentation7
- Documentation6
- PDF5
- FREE online course4
- online modules4
- podcast4
- Life Sciences Literature Database3
- slides3
- Series of videos2
- Bioinformatics2
- Coding2
- Computational Biology2
- Computer Science2
- Education2
- Programming2
- Scripts2
- youtube video2
- Blog post1
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- Data Science1
- E-Learning1
- Exercise1
- Handout1
- How-to guide1
- Learning pathway1
- Life Science Literature Database1
- Machine Learning1
- Notes1
- Tool1
- Toolkit1
- Transcriptomics1
- Vignette1
- ViralZone1
- educational materials1
- hands-on tutorial1
- knowledgebase1
- online tutorial1
- presentation1
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- Related resource
- Input datasets34
- Associated slides9
- Development in Galaxy slides6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- ChIP-Seq data analysis dataset2
- Epigenetics dataset2
- Galaxy Server administration slides2
- Genome Annotation dataset2
- Metagenomics dataset2
- Sequence analysis slides2
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- COBRA Toolbox1
- Chipster1
- Contributing to the Galaxy Training Material slides1
- Data Stewardship Wizard1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- ELIXIR's Impact Toolkit1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genome Annotation slides1
- Genomics England PanelApp1
- Introduction to Galaxy Analyses dataset1
- Introduction to Galaxy dataset1
- Introduction to the EGA and sharing sensitive data1
- OpenCloning1
- Recoding1
- Research Data Management in Life Sciences1
- Slides1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- Statistics dataset1
- Transcriptomics slides1
- User Interface and Features dataset1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
- Video of the course1
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- Switzerland677
- EMBL-EBI483
- France112
- United Kingdom100
- Belgium38
- Germany37
- Czech Republic21
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- Finland14
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- Slovenia3
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- Sweden2
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- Collection
- PHENotyping and EnviroTyping (PHENET training collection)19
- ELIXIR Toxicology Community9
- PINK project9
- ELIXIR Federated Human Data Community7
- Byte-sized RSE series5
- ELIXIR SIS-Containers - collection of training materials4
- ELIXIR Systems Biology Community: training events and materials4
- Single-cell Omics Community - collection of courses and materials4
- VEIS - Value of the EGA for Industry and Society4
- ELIXIR Biodiversity Community3
- Impact of research infrastructures2
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- Active46
- Under development1
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