Materials - TeSS (Training eSupport System)

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- Scientific topic
- R152
- R program152
- R script152
- Genome annotation140
- Exomes119
- Genomes119
- Genomics119
- Personal genomics119
- Synthetic genomics119
- Viral genomics119
- Whole genomes119
- Comparative transcriptomics117
- Transcriptome117
- Transcriptomics117
- MicroRNA sequencing113
- RNA sequencing113
- RNA-Seq113
- RNA-Seq analysis113
- Small RNA sequencing113
- Small RNA-Seq113
- Small-Seq113
- Transcriptome profiling113
- WTSS113
- Whole transcriptome shotgun sequencing113
- miRNA-seq113
- Chromosome walking101
- Clone verification101
- DNA-Seq101
- DNase-Seq101
- High throughput sequencing101
- High-throughput sequencing101
- NGS101
- NGS data analysis101
- Next gen sequencing101
- Next generation sequencing101
- Panels101
- Primer walking101
- Sanger sequencing101
- Sequencing101
- Targeted next-generation sequencing panels101
- Python77
- Python program77
- Python script77
- py77
- Data management75
- Metadata management75
- Research data management (RDM)75
- Bayesian methods74
- Biostatistics74
- Descriptive statistics74
- Gaussian processes74
- Inferential statistics74
- Markov processes74
- Multivariate statistics74
- Probabilistic graphical model74
- Probability74
- Statistics74
- Statistics and probability74
- FAIR data63
- Findable, accessible, interoperable, reusable data63
- Active learning61
- Ensembl learning61
- Kernel methods61
- Knowledge representation61
- Machine learning61
- Neural networks61
- Recommender system61
- Reinforcement learning61
- Supervised learning61
- Unsupervised learning61
- Single-cell genomics60
- Single-cell sequencing60
- Data rendering48
- Data visualisation48
- Breakend assembly38
- Genome assembly38
- Genomic assembly38
- Sequence assembly (genome assembly)38
- Variant pattern analysis38
- Functional genome annotation33
- Metagenome annotation33
- Structural genome annotation33
- Pipelines28
- Software integration28
- Tool integration28
- Tool interoperability28
- Workflows28
- Metagenomics25
- Shotgun metagenomics25
- Cloud computing20
- Computer science20
- HPC20
- High performance computing20
- High-performance computing20
- Antimicrobial stewardship17
- ChIP-exo17
- ChIP-seq17
- ChIP-sequencing17
- Chip Seq17
- Chip sequencing17
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- Operation
- Data handling8
- File handling8
- File processing8
- Processing8
- Report handling8
- Utility operation8
- Data extraction6
- Data retrieval6
- Data retrieval (metadata)6
- Metadata retrieval6
- Retrieval6
- Database retrieval5
- Query5
- Query and retrieval5
- Database search4
- Search4
- Normalisation3
- Standardisation3
- Standardisation and normalisation3
- Design2
- Alignment1
- Alignment construction1
- Alignment generation1
- Allele calling1
- Data formatting1
- Data reformatting1
- Data visualisation1
- Exome variant detection1
- File format conversion1
- File formatting1
- File reformatting1
- Format conversion1
- Genome variant detection1
- Germ line variant calling1
- Molecular visualisation1
- Mutation detection1
- Ontology browsing1
- Ontology visualisation1
- Plotting1
- Quality control1
- Read pre-processing1
- Rendering1
- Sequence read pre-processing1
- Somatic variant calling1
- Validation1
- Variant calling1
- Variant mapping1
- Visualisation1
- de novo mutation detection1
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- Tool
- V-pipe2
- ViralZone2
- Cellosaurus1
- GlyConnect1
- ISMARA1
- nextstrain.org1
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- Standard database or policy
- Ontology Lookup Service2
- Cellosaurus1
- ModelArchive1
- PRoteomics IDEntifications database1
- Resource Identification Portal 1
- The European Genome-phenome Archive1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
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- Content provider
- Glittr.org837
- ERGA Knowledge Hub128
- SIB Swiss Institute of Bioinformatics113
- BY-COVID31
- ELIXIR2
- GOBLET1
- IFB French Institute of Bioinformatics1
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- Keyword
- R305
- Python126
- Genomics119
- Transcriptomics118
- Next generation sequencing117
- RNA-seq114
- Data management75
- Statistics75
- Data science67
- Machine learning62
- Single-cell sequencing61
- Unix/Linux61
- FAIR data58
- Reproducibility57
- Variant analysis49
- Data visualization48
- Version control48
- Genome assembly39
- General36
- Genome annotation34
- training31
- Workflows27
- Long read sequencing26
- Metagenomics26
- Containerization22
- High performance computing22
- Shiny22
- Spatial transcriptomics21
- FAIR20
- Nextflow19
- ChIP-seq18
- Docker18
- Microbiology18
- Comparative genomics17
- Artificial intelligence16
- Image analysis14
- Julia14
- Quarto14
- ATAC-seq13
- Epigenetics13
- Galaxy13
- Pathways and Networks13
- Clinical data12
- Enrichment analysis12
- Rmarkdown12
- genes and genomes11
- Cloud computing10
- FAIRsharing10
- Proteomics10
- Singularity10
- Snakemake10
- Epidemiology9
- Knowledge graph9
- Multiomics9
- Population genetics9
- SPARQL9
- databases9
- policies9
- reproducibility9
- standards9
- Database Management8
- Ontology8
- RDF8
- Science Communication8
- medicine and health8
- next generation sequencing8
- data management7
- programming7
- ABS6
- Data submission6
- Interoperability6
- Quality Control6
- SARS-CoV-26
- biostatistics6
- data visualisation6
- services and resources6
- Assembly Evaluation5
- CWL5
- Citizen Science5
- Educational resources5
- Large language models5
- Metabolomics5
- Nagoya5
- Phylogenetics / Phylogenomics5
- Query data5
- Research Data Management5
- alan bridge group5
- torsten schwede & thierry sengstag group5
- Open Science4
- SQL4
- Social sciences4
- Standards4
- basic research4
- environmental science4
- experimental biology4
- infectious disease4
- mark ibberson group4
- transcriptomics4
- DMEG3
- Data mining3
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- Competency level
- Not specified1004
- Beginner87
- Intermediate20
- Advanced3
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- Licence
- License Not Specified677
- Creative Commons Attribution 4.0 International141
- MIT License107
- Creative Commons Attribution Share Alike 4.0 International66
- GNU General Public License v3.0 only45
- Creative Commons Zero v1.0 Universal33
- BSD 3-Clause "New" or "Revised" License14
- Apache License 2.012
- Creative Commons Attribution Non Commercial Share Alike 4.0 International6
- Creative Commons Attribution Non Commercial 4.0 International4
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- Do What The F*ck You Want To Public License1
- The Unlicense1
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- Target audience
- Bioinformaticians15
- Data Managers12
- Data Scientists12
- Research Scientists12
- Biomedical Researchers11
- Bench biologists5
- Researchers5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists4
- Laboratory technicians4
- Veterinarians4
- Biologists with little or no prior computational experience3
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Life Science Researchers2
- Ontologists2
- PhD students2
- Trainers2
- Training Designers2
- Training instructors2
- bioinformaticians2
- All postgraduates1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone who wants to become a good trainer or teacher1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Biologists, Genomicists, Computer Scientists1
- Biomedical researchers1
- Clinical Scientists1
- Clinicians1
- Data Scientist1
- Data managers1
- Data stewards1
- Graduate Students1
- Life science researchers who are new to high performance computing1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Operators, developers and managers of bioinformatics resources1
- Research scientists1
- Researcher in life sciences1
- Students1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- beginner bioinformaticians1
- biocurators1
- post-docs1
- statisticians1
- teachers1
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- Author
- SIB Swiss Institute of Bioinformatics108
- The Carpentries Incubator52
- bioinformatics.ca35
- Teaching materials at the Harvard Chan Bioinformatics Core25
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- The Gulbenkian Training Programme in Bioinformatics19
- UC Davis Bioinformatics Core Training Page18
- Data Carpentry17
- posit::conf(2024)17
- Wandrille Duchemin15
- CRUK CI Bioinformatics Core13
- Monique Zahn13
- Personalized Health Informatics Group12
- Geert van Geest11
- Canadian Bioinformatics Workshops10
- Fred Hutch Data Science Lab10
- ELIXIR Estonia9
- rstudio::conf(2022)9
- Sundeep Agarwal8
- Biocore@CRG7
- Bioinformatics, Rockefeller University7
- Robin Engler7
- Sergio Martínez Cuesta7
- BU-ISCIII6
- JuliaAcademy6
- Philippe Le Mercier6
- Software Carpentry6
- VIB Training & Conferences6
- Vasundra Touré6
- Deepak Tanwar5
- ELIXIR Europe Training5
- Grégoire Rossier5
- Hadley Wickham5
- Health Data Science Sandbox5
- Marie-Claude Blatter5
- MolSSI Education5
- The Carpentries Lab5
- Thuong Van Du Tran5
- Vassilios Ioannidis5
- cambiotraining5
- jhudsl5
- Alex's Lemonade Stand Foundation4
- BioNT Training4
- Computational Biology and Bioinformatics at UCLouvain4
- Elisabeth Gasteiger4
- Institut Français de Bioinformatique (IFB)4
- Markus Müller4
- RStudio4
- Rami Krispin4
- Ted Laderas4
- Waldron Lab at the CUNY SPH4
- coderefinery4
- Boas Pucker3
- C. Li3
- Firas Zemzem3
- Frédéric Burdet3
- Heinz Stockinger3
- Joana Carlevaro3
- Joana Carlevaro Fita3
- Julien Roux3
- Lukas Weber3
- Mark Robinson3
- Philippe Lemercier3
- R Programming @ University of Cincinnati3
- RStudio Education3
- Rafael A Irizarry3
- Richard McElreath3
- Roger D. Peng3
- Sydney Informatics Hub3
- VIB Technologies: Training material and software projects3
- VIB Training & Conferences Program3
- Volker Flegel3
- posit-dev3
- Aedin Culhane2
- Allen Downey2
- Ana-Claudia Sima2
- Antonello Lobianco2
- BiGCaT, Department of Translational Genomics2
- Bioconductor2
- Bradley Boehmke2
- Bruno Rodrigues2
- Cloud-SPAN2
- Daniele Silvestro2
- David Dalpiaz2
- Davis Laboratory2
- Deepak Unni2
- ELIXIR-Norway Training2
- Emil Hvitfeldt2
- Jake Vanderplas2
- James W. MacDonald2
- Jennifer (Jenny) Bryan2
- Jessica Lindvall2
- Joao Lourenço2
- Jose A Dianes2
- Leiden Computational Biology Center2
- Marc Robinson-Rechavi2
- Martin Emons2
- Martin J Frigaard2
- Master of Environmental Data Science (MEDS) program2
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- Contributor
- Toby Hodges81
- François Michonneau69
- Erin Becker63
- Zhian N. Kamvar59
- Mine Cetinkaya-Rundel56
- Katrin Leinweber54
- Raniere Silva53
- Tracy Teal53
- W. Trevor King52
- Andy Boughton51
- maneesha51
- Katie Anne Mills48
- Maxim Belkin48
- David Pérez-Suárez44
- Gabriel A. Devenyi44
- Canadian Bioinformatics Workshops43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Greg Wilson41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Rémi Emonet38
- William L. Close38
- Rayna M Harris37
- Sarah Brown35
- Gerard Capes34
- trk31
- Renato Alves30
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Christina K.28
- Alex Whan27
- Paula Andrea Martinez26
- Michael Joseph25
- Anthony Gitter24
- Geert van Geest24
- João Rodrigues24
- Sarah Stevens22
- Robert Davey21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- The Gulbenkian Training Programme in Bioinformatics19
- Paola Prieto18
- Aaron O'Leary17
- C. Titus Brown17
- Annajiat Alim Rasel16
- Benson Muite16
- Trevor Bekolay16
- Will Gammerdinger16
- Hannah Lyman15
- John Blischak15
- Mark Fernandes15
- Meeta Mistry15
- Radhika Khetani15
- Bianca Peterson14
- Candace Savonen14
- Lex Nederbragt14
- Carrie Wright13
- Karen Word13
- Mateusz Kuzak13
- Wolmar Nyberg Åkerström13
- jhudsl-robot13
- zhibinlu13
- Andrew Reid12
- Ethan White12
- JCSzamosi12
- Laurent Gatto12
- Stéphane Guillou12
- Ariel Rokem11
- Hugo Tavares11
- Ivan Gonzalez11
- Jihe Liu11
- Karen Cranston11
- Kate Isaac11
- Kilian Lieret11
- Kunal Marwaha11
- Miguel Cardoso11
- Niclas Jareborg11
- Pete11
- Pete Bachant11
- Radovan Bast11
- Trevor Keller11
- Wandrille D.11
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- Resource type
- e-learning20
- Video13
- E-learning8
- Training materials8
- Mock data3
- E-Learning2
- Computer Software1
- Lecture1
- Presentation1
- Slideshow1
- Toolkit1
- Training materials with mock data1
- Tutorial1
- ViralZone1
- workflow1
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- Node
- Switzerland
- EMBL-EBI511
- United Kingdom226
- France158
- Belgium85
- Netherlands85
- Germany43
- Czech Republic31
- Portugal30
- Estonia22
- Finland21
- Spain21
- Sweden17
- Cyprus16
- Slovenia16
- Norway13
- Luxembourg9
- Denmark7
- Italy7
- Greece4
- Israel1
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- Collection
- Elements of Data Management5
- SARS-CoV-2 : Studying a new virus5
- PINK project4
- ELIXIR Biodiversity Community1
- HemaFAIR Training: Applying FAIR Principles in Hematology Research1
- Impact of research infrastructures1
- VIP138 SLOT Online Terbaik saat ini di Indonesia1
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- Status
- Active32
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