Training materials
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e-learning
Neoantigen 1a: Fusion-Database-Generation
• BeginnerProteomics Proteomics label-free -
e-learning
Neoantigen 2: Non-normal-Database-Generation
• BeginnerProteomics Proteomics label-free -
e-learning
Neoantigen 4: Variant Annotation
• BeginnerProteomics Proteomics label-free -
e-learning
Neoantigen 3: PepQuery2 Verification
• BeginnerProteomics Proteomics label-free -
e-learning
Neoantigen 2: Database merge and FragPipe discovery
• BeginnerProteomics Proteomics label-free -
e-learning
Neoantigen 5b: IEDB binding Validated Neopeptides
• BeginnerProteomics Proteomics label-free -
e-learning
Neoantigen 5a: Predicting HLA Binding
• BeginnerProteomics Proteomics label-free -
e-learning
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
• BeginnerMetagenomics Microbial ecology Genomics Microbiology Sequence analysis Mobile genetic elements Microbiome -
e-learning
Creating community content
• BeginnerGalaxy Community Building -
e-learning
Galaxy usage on SURF Research Cloud
• BeginnerInformatics Data management Galaxy Server administration deploying