Materials - TeSS (Training eSupport System)

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- Scientific topic
- Data management234
- Metadata management234
- Research data management (RDM)234
- Genome annotation230
- Exomes208
- Genomes208
- Genomics208
- Personal genomics208
- Synthetic genomics208
- Viral genomics208
- Whole genomes208
- Comparative transcriptomics191
- Transcriptome191
- Transcriptomics191
- MicroRNA sequencing173
- RNA sequencing173
- RNA-Seq173
- RNA-Seq analysis173
- Small RNA sequencing173
- Small RNA-Seq173
- Small-Seq173
- Transcriptome profiling173
- WTSS173
- Whole transcriptome shotgun sequencing173
- miRNA-seq173
- FAIR data164
- Findable, accessible, interoperable, reusable data164
- R153
- R program153
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- Bayesian methods148
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- Python78
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- py78
- Bottom-up proteomics75
- Discovery proteomics75
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- MS-based untargeted proteomics75
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- Peptide identification75
- Protein and peptide identification75
- Proteomics75
- Quantitative proteomics75
- Targeted proteomics75
- Top-down proteomics75
- Biodiversity69
- Single-cell genomics62
- Single-cell sequencing62
- Data rendering61
- Data visualisation61
- Antimicrobial stewardship56
- Medical microbiology56
- Microbial genetics56
- Microbial physiology56
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- Operation
- Alignment1
- Alignment construction1
- Alignment generation1
- Allele calling1
- Data handling1
- Exome variant detection1
- File handling1
- File processing1
- Genome variant detection1
- Germ line variant calling1
- Mutation detection1
- Processing1
- RNA-Seq analysis1
- Read pre-processing1
- Report handling1
- Sequence read pre-processing1
- Somatic variant calling1
- Utility operation1
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- Tool
- BioContainers1
- Bioconductor1
- DESeq1
- EDAM-Browser1
- Enrichr1
- FastQC1
- GSEA1
- Identifiers.org1
- MultiQC1
- Nextflow1
- Ontology Lookup Service1
- QualiMap1
- RStudio1
- SAMtools1
- STAR1
- Salmon1
- Trim Galore1
- UCSC Genome Browser1
- V-pipe1
- bio.tools1
- biomaRt1
- ggplot21
- nf-core-rnaseq1
- omnipy1
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- Standard database or policy
- FAIRtracks1
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- Content provider
- Glittr.org26
- European Bioinformatics Institute (EBI)9
- Australian BioCommons2
- PerMedCoE2
- Bioinformatics and Biomathematics Training Hub1
- Centre for Genomic Regulation (CRG)1
- ELIXIR-SI eLearning Platform (EeLP)1
- EMBL-ABR1
- SIB Swiss Institute of Bioinformatics1
- VIB Training & Conferences1
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- Keyword
- Workflows30
- Nextflow16
- Snakemake6
- Reproducibility5
- CWL4
- Containerization4
- Data visualization3
- R3
- RNA-seq3
- Variant analysis3
- ATAC-seq2
- Bioinformatics2
- Docker2
- EOSC-Life2
- Epigenetics2
- FAIR2
- Galaxy2
- Genomics2
- HPC2
- Machine learning2
- Transcriptomics2
- Unix/Linux2
- Version control2
- commonwl2
- Variant-calling1
- Automated testing1
- BIoinformatics1
- Building blocks1
- ChIP-seq1
- Cloud1
- Cloud Research Environment1
- Cloud computing1
- Command line1
- Comparative genomics1
- Containers1
- DSL21
- Data analysis1
- Data management1
- Data science1
- EDAM1
- EeLP1
- General1
- Genome annotation1
- Genome assembly1
- Health Services1
- High performance computing1
- JIC1
- John Innes Centre1
- Metabolome1
- Metabolomics analysis1
- Metagenomics1
- NGS bioinformatics1
- NextFlow1
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- Phenome1
- Pipelines1
- Python1
- Python for Data Analysis1
- R Programming1
- RAP1
- RStudio1
- Reproducible Analytical Pipeline1
- Reproducible Environment1
- Reproducible Research1
- Reproducible Science1
- Research software1
- Shell1
- SimPy1
- Simulation1
- Singularity1
- SnakeMake1
- Statistics1
- WorkflowHub1
- bioinformatics1
- building blocks1
- common workflow language1
- coronavirus1
- cwl1
- discrete-event simulation1
- eLearning1
- nf-co.re1
- reproduce1
- reproducible research1
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- simmer1
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- Competency level
- Not specified38
- Beginner7
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- Licence
- License Not Specified29
- Creative Commons Attribution 4.0 International8
- MIT License5
- GNU General Public License v3.0 only2
- Apache License 2.01
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- Creative Commons Attribution Share Alike 4.0 International1
- Other (Attribution)1
- Other (Not Open)1
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- Target audience
- Clinicians3
- PhD students3
- bioinformaticians3
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
- Biologists2
- Analysts1
- Biologists interested in learning about RNA-seq1
- Biologists, Genomicists, Computer Scientists1
- EIP members1
- Graduate students1
- PhD Students1
- Post docs1
- Postgraduate students1
- Research Software Engineers1
- Researchers1
- Students1
- esearchers and research software engineers who would like to begin automating their analyses in workflows. 1
- life scientists1
- programmers1
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- Author
- The Carpentries Incubator4
- Biocore@CRG3
- Javi Conejero2
- Amy Heather1
- Anmol J. Hemrom1
- Anna Delgado Tejedor1
- Annabel Cansdale1
- Anne Luesink1
- Applied Genomics1
- Biodata Analysis Group1
- BovReg1
- Bruno Rodrigues1
- CRUK CI Bioinformatics Core1
- Dockstore1
- Douglas Lowe1
- Emma Rand1
- Evelyn Greeves1
- Fabian Andrade Lozano1
- Firas Zemzem1
- Fred Hutch Data Science Lab1
- Genome Informatics Facility1
- Gerard Capes1
- Ienasescu, Hans1
- Ivan Topolsky1
- Johan Gustafsson1
- Jorge Buenabad-Chavez1
- Julia Ponomarenko1
- Kalaš, Matúš1
- Kobe Lavaerts1
- Kris Davie1
- Luca Cozzuto1
- Michael Crusoe1
- Michael R. Crusoe1
- Oscar Baruffa1
- R. Burke Squires1
- Rob Finn1
- Romain Feron1
- SIB Swiss Institute of Bioinformatics1
- Sarah Bonnin1
- Sarah Forrester1
- Sateesh_Peri1
- Seqera1
- Simon Gladman1
- Steff Taelman1
- Sveinung Gundersen1
- Sydney Informatics Hub1
- Toni Hermoso Pulido1
- Tuur Muyldermans1
- VIB Technologies: Training material and software projects1
- VIB Training & Conferences1
- Workflow Languages in R1
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- Contributor
- Toby Hodges5
- Jose Espinosa-Carrasco3
- Luca Cozzuto3
- Toni Hermoso Pulido3
- Abby Cabunoc Mayes2
- Allen Lee2
- Andrew Sanchez2
- Andy Boughton2
- Brandon Curtis2
- Chris Hakkaart2
- David Mawdsley2
- David Pérez-Suárez2
- Edward Wallace2
- Erin Becker2
- EvanWill2
- Fotis E. Psomopoulos2
- François Michonneau2
- Gabriel A. Devenyi2
- Greg Wilson2
- Ian Lee2
- James Allen2
- Jeff Oliver2
- Jemma Stachelek2
- Joel Nothman2
- Jon Pipitone2
- Jonah Duckles2
- Julia Ponomarenko2
- Katie Anne Mills2
- Katrin Leinweber2
- Marcel Ribeiro-Dantas2
- Maxim Belkin2
- Michael Hansen2
- Michael R. Crusoe2
- Nick Young2
- Pedro L Fernandes2
- Piotr Banaszkiewicz2
- Raniere Silva2
- Remi Rampin2
- Rémi Emonet2
- Sateesh_Peri2
- Sehrish Kanwal2
- Stian Soiland-Reyes2
- Tracy Teal2
- Tuur Muyldermans2
- W. Trevor King2
- William L. Close2
- Zhian N. Kamvar2
- naught1012
- trk2
- Abhinav Sharma1
- Adam Fleischhacker1
- Adam Talbot1
- Adejumo Ridwan Suleiman1
- Adelme Bazin1
- Aedin Culhane1
- Alejandro Sanz Garcia1
- Aleksandra E. Badaczewska-Dawid1
- Alex Whan1
- Alexander1
- Alexander Botzki1
- Alexandru Mahmoud1
- Alison Harper1
- Amina Echchiki1
- Ana Conrado1
- Anabella Trigila1
- Andrew Duncan1
- Andrew Severin1
- Andrew Spiers1
- Anne Luesink1
- Anthony Gitter1
- Antonia Taiani1
- Antonin Thiébaut1
- Arthur1
- Arun Seetharam1
- Balázs Brankovics1
- Bjørn Peare Bartholdy1
- Bruna Piereck1
- Bruno Rodrigues1
- Bryan Cosca1
- Bryan Shalloway1
- Candace Savonen1
- Carrie Wright1
- Charles Coulombe1
- Chia Sin Liew1
- Chris Fields1
- Chris Wyatt1
- Christian Brueffer1
- Christina K.1
- Christophe Dervieux1
- Christopher Bottoms1
- Christopher Harrison1
- Claire Fraser1
- Colin Fay1
- Cris Tuñí i Domínguez1
- DC231
- Denis Yuen1
- Desk35051
- Diana Marek1
- Douglas Lowe1
- Edmund Miller1
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- Resource type
- Recorded webinar6
- e-learning4
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- Training materials3
- Tutorial3
- course materials3
- Computer Software2
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- workflow2
- Book1
- Carpentries style curriculum1
- Coding1
- Computer Science1
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- E-Learning1
- E-learning1
- Education1
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- FREE online course1
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- Installation instructions1
- Jupyter notebook1
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- Open educational resource1
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- case studies1
- e-Learning1
- educational materials1
- examples1
- handbook1
- hands-on tutorial1
- knowledgebase1
- online course1
- online modules1
- online tutorial1
- tutorial1
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- Node
- Switzerland27
- EMBL-EBI10
- Belgium1
- Netherlands1
- Slovenia1
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- Collection
- ELIXIR SIS-Containers - collection of training materials2
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- Active6
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Scientific topics: Software integration

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