Materials - TeSS (Training eSupport System)

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- Scientific topic
- Algorithms69
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- Software engineering69
- Exomes48
- Genome annotation48
- Genomes48
- Genomics48
- Personal genomics48
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- Viral genomics48
- Whole genomes48
- Biodiversity43
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- Gaussian processes41
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- Markov processes41
- Multivariate statistics41
- Probabilistic graphical model41
- Probability41
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- Statistics and probability41
- Bottom-up proteomics39
- Discovery proteomics39
- MS-based targeted proteomics39
- MS-based untargeted proteomics39
- Metaproteomics39
- Peptide identification39
- Protein and peptide identification39
- Proteomics39
- Quantitative proteomics39
- Targeted proteomics39
- Top-down proteomics39
- Comparative transcriptomics38
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- Biological sequences36
- Sequence analysis36
- Sequence databases36
- Rare diseases35
- Community analysis33
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- Computational ecology30
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- Ecology30
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- Assembly27
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- Research data management (RDM)27
- Sequence assembly27
- Antimicrobial stewardship26
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- Microbiological surveillance26
- Microbiology26
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- Molecular microbiology26
- DNA variation22
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- Genomic variation22
- Mutation22
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- Diffraction experiment20
- Imaging20
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- Microscopy imaging20
- Optical super resolution microscopy20
- Photonic force microscopy20
- Photonic microscopy20
- Bioinformatics18
- Taxonomy17
- Exometabolomics14
- LC-MS-based metabolomics14
- MS-based metabolomics14
- MS-based targeted metabolomics14
- MS-based untargeted metabolomics14
- Mass spectrometry-based metabolomics14
- Metabolites14
- Metabolome14
- Metabolomics14
- Metabonomics14
- NMR-based metabolomics14
- Protein structure12
- Protein structure analysis12
- Protein tertiary structure12
- FAIR data11
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- Operation
- Data extraction3
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- Data retrieval (metadata)3
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- File handling3
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- Metadata retrieval3
- Processing3
- Report handling3
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- Utility operation3
- Data formatting1
- Data reformatting1
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- Database retrieval1
- File format conversion1
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- Molecular visualisation1
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- Tool
- Galaxy322
- FastQC27
- SAMtools21
- BWA20
- MultiQC20
- BEDTools14
- SCANPY14
- fastp14
- Falco13
- JBrowse12
- BLAST11
- Galaxy Image Analysis11
- ggplot211
- scikit-learn11
- BUSCO10
- Cutadapt10
- DeepTools10
- QUAST10
- scikit-image10
- FreeBayes9
- RStudio9
- Trimmomatic9
- taxonomy_krona_chart9
- GEMINI8
- STAR8
- BCFtools7
- Bandage7
- HISAT27
- NanoPlot7
- msConvert7
- BamTools6
- Biopython6
- FASTX-Toolkit6
- Flye6
- MAFFT6
- MaxQuant6
- Open Babel6
- seqtk6
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- SRA Software Toolkit5
- Workflow4Metabolomics5
- anndata5
- annotatemyids5
- compute_sequence_length5
- gffread5
- kraken25
- Bowtie 24
- Bwa-mem24
- Diamond4
- GOseq4
- Galactic Circos4
- KrakenTools4
- MSstats4
- MetaPhlAn4
- Newick Utilities4
- RSeQC4
- StringTie4
- The Protein Data Bank (PDB)4
- Trim Galore4
- UniProt4
- Unicycler4
- bx-python4
- gffcompare4
- mothur4
- xcms4
- Bakta3
- Bracken3
- Cardinal3
- CellProfiler3
- DESeq23
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- InterProScan (EBI)3
- MACS3
- Merqury3
- OMArk3
- QualiMap3
- RDKit3
- Salmon3
- Stacks3
- Vcflib3
- bed to protein map3
- customProDB3
- dRep3
- gfastats3
- iqtree3
- lofreq3
- snippy3
- snpEff3
- Apollo2
- Bio3D2
- COMBAT-TB Workbench2
- ChEMBL2
- CheckM2
- Circos2
- Clustal 1.8 (Clustal W, Clustal X)2
- European Nucleotide Archive (ENA)2
- FeatureCounts2
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- Standard database or policy
- Ontology Lookup Service2
- Cellosaurus1
- DisProt1
- ModelArchive1
- PRoteomics IDEntifications database1
- Resource Identification Portal 1
- The European Genome-phenome Archive1
- UniProt Knowledgebase1
- Worldwide Protein Data Bank1
- Zenodo 1
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- Content provider
- GTN539
- European Bioinformatics Institute (EBI)117
- SIB Swiss Institute of Bioinformatics20
- NBIS9
- VIB Training & Conferences7
- Danish National Health Data Science Sandbox3
- ELIXIR3
- Coursera1
- DTLS - Dutch Techcentre For Life Sciences1
- Fraunhofer FIT1
- Future Learn1
- NYU Langone Health1
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- Keyword
- jupyter-notebook55
- Foundations of Data Science48
- biodiversity46
- microgalaxy41
- Galaxy Server administration40
- Proteomics37
- Rare Diseases & Research35
- Statistics and machine learning35
- Single Cell34
- Ecology30
- Microbiome27
- Transcriptomics25
- Genome Annotation24
- Contributing to the Galaxy Training Material23
- FAIR Data, Workflows, and Research23
- Using Galaxy and Managing your Data23
- ansible20
- Imaging19
- git-gat18
- interactive-tools18
- work-in-progress18
- Assembly17
- Data management17
- Variant Analysis17
- Development in Galaxy16
- elixir16
- fair16
- jbrowse116
- Teaching and Hosting Galaxy training15
- gmod15
- earth-system14
- Climate13
- Introduction to Galaxy Analyses13
- FAIR12
- Introduction12
- paper-replication12
- prokaryote12
- MIGHTS11
- cyoa11
- Image segmentation10
- Sequence analysis10
- ai-ml10
- assembly10
- data stewardship10
- eukaryote10
- label-free10
- plants10
- CONVERGE9
- DDA9
- Metabolomics9
- R9
- covid199
- metagenomics9
- ocean9
- one-health9
- Computational chemistry8
- Epigenetics8
- Galaxy Community Building8
- PDBe8
- workflows8
- 10x7
- EBV dataset7
- EBV workflow7
- Metadata7
- Protein families7
- collections7
- data management7
- dmp7
- español7
- metabarcoding7
- nanopore7
- transcriptomics7
- Genome sequencing6
- Overlay6
- SARS-CoV-26
- Sequence alignments6
- Variants6
- deutsch6
- ecology6
- illumina6
- italiano6
- rmarkdown-notebook6
- train-the-trainers6
- virology6
- 16S5
- Bioimaging5
- Large Language Model5
- Network analysis5
- Programmatic access5
- SQL5
- Small molecules5
- Systems biology5
- deploying5
- jobs5
- label-TMT115
- mouse5
- ro-crate5
- Community4
- Conversion4
- DIA4
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- Competency level
- Beginner458
- Intermediate126
- Not specified125
- Advanced31
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- Licence
- Creative Commons Attribution 4.0 International552
- License Not Specified161
- Creative Commons Attribution Share Alike 4.0 International19
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International3
- Creative Commons Attribution Non Commercial Share Alike 4.0 International2
- MIT License2
- Creative Commons Attribution Non Commercial 4.0 International1
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- Target audience
- Students434
- PhD students119
- Clinicians118
- Galaxy Administrators56
- Instructors46
- health professionals13
- Scientists12
- healthcare professionals11
- PhD candidates9
- Researcher in life sciences9
- Health Care Professionals8
- Patient Advocates 8
- rare disease patients representatives7
- Life Science Researchers7
- Bioinformaticians6
- Researchers6
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Bench biologists3
- Biologists3
- Biologists with little or no prior computational experience3
- Biomedical researchers3
- Clinical Scientists3
- General Physicians3
- biologists3
- medical students3
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Laboratory technicians2
- PhD Students2
- Veterinarians2
- biocurators2
- All postgraduates1
- Analysts1
- Anyone dealing with cell lines with no or little knowledge of the Cellosaurus resource.1
- Anyone wishing to interpret graphs showing the progression of COVID-19.1
- Biologists and bioinformaticians1
- Biomedical Researchers1
- Biotechnology Companies1
- Data Managers1
- Data Scientists1
- Fellows and Residents1
- Graduate Students1
- Healthcare1
- Life science researchers who are new to high performance computing1
- Life scientists with no or little knowledge of the ISMARA tool.1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Neurological1
- Neurologists1
- Paediatricians1
- Postgraduate students1
- Primary care doctors1
- Research Scientists1
- Research Software Engineers1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- Support Staff1
- beginner1
- beginner bioinformaticians1
- geneticists1
- physisians1
- postdocs1
- postdoctoral researchers1
- postgrad1
- science students1
- scientists1
- teachers / trainers1
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- Author
- Helena Rasche94
- Bérénice Batut81
- Saskia Hiltemann38
- Björn Grüning28
- Anton Nekrutenko25
- Yvan Le Bras24
- Subina Mehta23
- The Carpentries23
- Fotis E. Psomopoulos21
- Bazante Sanders18
- Marie Josse18
- Wendi Bacon18
- Anthony Bretaudeau17
- Katarzyna Kamieniecka17
- Krzysztof Poterlowicz17
- Simon Gladman15
- Nicola Soranzo14
- Donny Vrins13
- James Johnson13
- Katherine Do13
- Monique Zahn13
- Wolfgang Maier13
- Anne Fouilloux12
- Julia Jakiela12
- Mehmet Tekman12
- Paul Zierep12
- Simon Bray12
- Khaled Jum'ah11
- Maria Doyle11
- Cristóbal Gallardo10
- Delphine Lariviere10
- Melanie Föll10
- Pavankumar Videm10
- Pratik Jagtap10
- Anup Kumar9
- Marius van den Beek9
- Nate Coraor9
- Avans Hogeschool8
- Diana Chiang Jurado8
- Timothy J. Griffin8
- Anika Erxleben7
- Daniel Blankenberg7
- Dave Clements7
- Florian Christoph Sigloch7
- Laura Cooper7
- Leonid Kostrykin7
- Lucille Delisle7
- Matthias Fahrner7
- Praveen Kumar7
- Robert Andrews7
- Allegra Via6
- Andrew Mason6
- Anna Syme6
- Branka Franicevic6
- Coline Royaux6
- ELIXIR Goblet Train the Trainers6
- Emma Leith6
- Patricia Palagi6
- Philippe Rocca-Serra6
- Raphael Mourad6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Alex Ostrovsky5
- Beatriz Serrano-Solano5
- Christopher Barnett5
- Clemens Blank5
- Dechen Bhuming5
- Erwan Corre5
- Joachim Wolff5
- John Chilton5
- John Davis5
- Kellie Snow5
- Korneel Hens5
- Munazah Andrabi5
- Nadia Goué5
- Nick Juty5
- Ray Sajulga5
- Riccardo Massei5
- Saskia Lawson-Tovey5
- Solenne Correard5
- Stéphanie Robin5
- Alexandre Cormier4
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Anne Pajon4
- Daniela Schneider4
- Gildas Le Corguillé4
- Helge Hecht4
- Hélène Chiapello4
- Kaivan Kamali4
- Keiler Collier4
- Laura Leroi4
- Mallory Freeberg4
- Marisa Loach4
- Mira Kuntz4
- Morgan Howells4
- Romane LIBOUBAN4
- Simone Leo4
- Tristan Reynolds4
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- Contributor
- Saskia Hiltemann473
- Helena Rasche392
- Björn Grüning341
- Bérénice Batut196
- Nicola Soranzo112
- Martin Čech92
- Anthony Bretaudeau85
- Niall Beard65
- Wendi Bacon63
- Armin Dadras60
- Marius van den Beek55
- Nate Coraor52
- Cristóbal Gallardo49
- Gildas Le Corguillé49
- Teresa Müller45
- Beatriz Serrano-Solano42
- Lucille Delisle40
- Pavankumar Videm38
- William Durand38
- Yvan Le Bras38
- Mehmet Tekman37
- Marie Josse36
- Simon Gladman35
- Wolfgang Maier35
- Melanie Föll31
- Anup Kumar27
- Simon Bray25
- Donny Vrins24
- Peter van Heusden23
- Subina Mehta23
- Maria Doyle22
- Leonid Kostrykin20
- Bazante Sanders19
- Julia Jakiela19
- Tristan Reynolds18
- Deepti Varshney17
- Khaled Jum'ah17
- Paul Zierep17
- Anton Nekrutenko16
- Anne Fouilloux15
- Delphine Lariviere14
- Pratik Jagtap14
- Mélanie Petera13
- Timothy J. Griffin13
- Daniela Schneider12
- David López12
- Marisa Loach12
- Mira Kuntz12
- Pablo Moreno12
- Diana Chiang Jurado11
- Matthias Bernt11
- Gianmauro Cuccuru10
- Katarzyna Kamieniecka9
- Paul De Geest9
- Stéphanie Robin9
- Amirhossein Naghsh Nilchi8
- Anna Syme8
- Elin Kronander8
- Verena Moosmann8
- Wolmar Nyberg Åkerström8
- Katherine Do7
- Mallory Freeberg7
- Markus Englund7
- Mattias Strömberg7
- Stephan Nylinder7
- Yvonne Kallberg7
- Bert Droesbeke6
- Christopher Barnett6
- Clemens Blank6
- Enis Afgan6
- Erik Hedman6
- Florian Christoph Sigloch6
- Hans-Rudolf Hotz6
- Linelle Abueg6
- Morgan Howells6
- Niclas Jareborg6
- Solenne Correard6
- Alireza Khanteymoori5
- Clea Siguret5
- Dave Clements5
- Ekaterina Polkh5
- Florian Heyl5
- John Chilton5
- John Davis5
- Kaivan Kamali5
- Riccardo Massei5
- Tomas Klingström5
- Wandrille Duchemin5
- olisand5
- Alexandre Cormier4
- Coline Royaux4
- Eli Chadwick4
- Fabio Cumbo4
- Fotis E. Psomopoulos4
- Natalie Whitaker-Allen4
- Vassilios Ioannidis4
- Alex Ostrovsky3
- Catherine Bromhead3
- Engy Nasr3
- Jasper Ouwerkerk3
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- Resource type
- e-learning
- Recorded webinar301
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- slides191
- Tutorial134
- Training materials76
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- lessons53
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- tutorial50
- hands-on tutorial38
- video38
- Slidedeck31
- Documentation30
- course materials29
- exercise26
- Scripts20
- Exercise18
- Handout17
- Lecture16
- Poster16
- PDF14
- Slideshow14
- E-learning9
- E-Learning8
- Jupyter notebook7
- Series of videos6
- Online material6
- Bioinformatics5
- Coding5
- FREE online course5
- online modules5
- tutorials5
- youtube video5
- examples4
- online course4
- podcast4
- Book3
- Computational Biology3
- Computer Science3
- Computer Software3
- Data Science3
- Education3
- How-to guide3
- Learning pathway3
- Life Sciences Literature Database3
- Mock data3
- Programming3
- e-Learning3
- online tutorial3
- scripts3
- slideck/ presentation3
- API reference2
- Installation instructions2
- Manual2
- Open educational resource2
- Series of videos2
- Vignette2
- case studies2
- educational materials2
- handbook2
- knowledgebase2
- presentation2
- workflow2
- Blog post1
- Carpentries style curriculum1
- E-learning + workshop1
- Educational Resource1
- Jupyter notebooks1
- Life Science Literature Database1
- Machine Learning1
- Metadata Registry1
- Notes1
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- R Shiny application1
- Recording1
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- Toolkit1
- Training materials with mock data1
- Transcriptomics1
- ViralZone1
- Workshop1
- additional reading1
- didactic activities1
- hackathon1
- implementation guidelines1
- slide deck / presentation1
- slides / presentation1
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- Related resource
- Associated Training Datasets285
- Associated Workflows270
- Jupyter Notebook (with Solutions)50
- Jupyter Notebook (without Solutions)50
- The Carpentries7
- Quarto/RMarkdown Notebook6
- GitHub1
- OpenCloning1
- OpenRefine1
- pydna1
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- EMBL-EBI117
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- United Kingdom3
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- Collection
- ELIXIR Biodiversity Community6
- Elements of Data Management5
- SARS-CoV-2 : Studying a new virus5
- ELIXIR Federated Human Data Community2
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
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- Active35
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