Materials - TeSS (Training eSupport System)

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- Scientific topic
- Algorithms53
- Computer programming53
- Data structures53
- Programming languages53
- Software development53
- Software engineering53
- Comparative transcriptomics51
- Exomes51
- Genome annotation51
- Genomes51
- Genomics51
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- Transcriptome51
- Transcriptomics51
- Viral genomics51
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- Bayesian methods46
- Biostatistics46
- Descriptive statistics46
- Gaussian processes46
- Inferential statistics46
- Markov processes46
- Multivariate statistics46
- Probabilistic graphical model46
- Probability46
- Statistics46
- Statistics and probability46
- Biodiversity41
- Bottom-up proteomics39
- Discovery proteomics39
- MS-based targeted proteomics39
- MS-based untargeted proteomics39
- Metaproteomics39
- Peptide identification39
- Protein and peptide identification39
- Proteomics39
- Quantitative proteomics39
- Targeted proteomics39
- Top-down proteomics39
- Metagenomics38
- Shotgun metagenomics38
- Biological sequences35
- Sequence analysis35
- Sequence databases35
- Assembly34
- Sequence assembly34
- Community analysis33
- Environmental microbiology33
- Microbial ecology33
- Microbiome33
- Molecular community analysis33
- Computational ecology30
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- Ecological informatics30
- Ecology30
- Ecosystem science30
- Diffraction experiment25
- Imaging25
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- Microscopy imaging25
- Optical super resolution microscopy25
- Photonic force microscopy25
- Photonic microscopy25
- Antimicrobial stewardship22
- Medical microbiology22
- Microbial genetics22
- Microbial physiology22
- Microbial surveillance22
- Microbiological surveillance22
- Microbiology22
- Molecular infection biology22
- Molecular microbiology22
- DNA variation19
- Genetic variation19
- Genomic variation19
- Mutation19
- Polymorphism19
- Somatic mutations19
- Taxonomy17
- Epigenomics14
- Data management13
- Metadata management13
- Open science13
- Research data management (RDM)13
- Exometabolomics12
- FAIR data12
- Findable, accessible, interoperable, reusable data12
- LC-MS-based metabolomics12
- MS-based metabolomics12
- MS-based targeted metabolomics12
- MS-based untargeted metabolomics12
- Mass spectrometry-based metabolomics12
- Metabolites12
- Metabolome12
- Metabolomics12
- Metabonomics12
- NMR-based metabolomics12
- Evolution10
- Evolutionary biology10
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- Operation
- Data handling1
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- Tool
- Galaxy360
- FastQC35
- SAMtools26
- MultiQC25
- BWA19
- BEDTools16
- fastp16
- scikit-learn16
- JBrowse15
- SCANPY15
- Falco14
- Cutadapt13
- DeepTools13
- BLAST12
- QUAST12
- ggplot212
- BUSCO11
- Galaxy Image Analysis11
- GEMINI10
- STAR10
- scikit-image10
- taxonomy_krona_chart10
- FreeBayes9
- NanoPlot9
- Trimmomatic9
- Bandage8
- FASTX-Toolkit8
- BCFtools7
- BamTools7
- Biopython7
- HISAT27
- msConvert7
- Flye6
- MAFFT6
- MaxQuant6
- Open Babel6
- Trim Galore6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- seqtk6
- DESeq25
- Galactic Circos5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- RStudio5
- SRA Software Toolkit5
- StringTie5
- anndata5
- annotatemyids5
- compute_sequence_length5
- gffcompare5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Diamond4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- Salmon4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- QualiMap3
- RDKit3
- SeqCode3
- SortMeRNA3
- Stacks3
- UCSC Genome Browser Utilities3
- Vcflib3
- bed to protein map3
- customProDB3
- dRep3
- export2graphlan3
- gfastats3
- humann3
- iqtree3
- lofreq3
- pyGenomeTracks3
- snippy3
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- Standard database or policy
- PRoteomics IDEntifications database1
- The Observational Medical Outcomes Partnership Common Data Model1
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- Content provider
- GTN544
- ELIXIR Estonia5
- Pattern Institute2
- Cloud-SPAN1
- ELIXIR1
- proteomicsML1
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- Keyword
- jupyter-notebook53
- Foundations of Data Science50
- biodiversity46
- Statistics and machine learning45
- Single Cell41
- microgalaxy41
- Proteomics37
- Ecology30
- Genome Annotation30
- Transcriptomics30
- Microbiome29
- Using Galaxy and Managing your Data27
- Assembly25
- FAIR Data, Workflows, and Research24
- metagenomics21
- Imaging19
- Variant Analysis18
- Climate17
- Introduction to Galaxy Analyses17
- FAIR principles16
- HemaFAIR16
- fair16
- jbrowse116
- work-in-progress16
- gmod15
- interactive-tools15
- prokaryote15
- Epigenetics13
- Open Science13
- Sequence analysis12
- assembly12
- earth-system12
- paper-replication12
- European research projects11
- MIGHTS11
- Metabolomics11
- Metadata11
- Research Data Management11
- ai-ml11
- covid1911
- elixir11
- Data sharing10
- Evolution10
- Image segmentation10
- cyoa10
- data stewardship10
- eukaryote10
- label-free10
- nanopore10
- plants10
- DDA9
- Visualisation9
- ocean9
- one-health9
- 10x8
- Computational chemistry8
- Data reuse8
- workflows8
- EBV dataset7
- EBV workflow7
- collections7
- dmp7
- ecology7
- español7
- metabarcoding7
- Overlay6
- R6
- data management6
- deutsch6
- illumina6
- italiano6
- mouse6
- ro-crate6
- transcriptomics6
- 16S5
- HELIOS5
- Large Language Model5
- Rare Diseases5
- SQL5
- bacteria5
- deconvolution5
- label-TMT115
- metatranscriptomics5
- rmarkdown-notebook5
- single-cell5
- taxonomic profiling5
- virology5
- Bioimaging4
- Conversion4
- DIA4
- Data management4
- Digital Humanities4
- FAIR4
- Healthcare4
- Multi-channel image4
- Object feature extraction4
- QC4
- amr4
- bulk4
- diversity4
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- Competency level
- Beginner426
- Intermediate113
- Not specified24
- Advanced12
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- Licence
- Creative Commons Attribution 4.0 International572
- MIT License2
- Creative Commons Zero v1.0 Universal1
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- Target audience
- Students
- Researchers240
- PhD students186
- Biologists, Genomicists, Computer Scientists170
- Post-Doctoral Fellows163
- Clinicians130
- Galaxy Administrators113
- Graduate students88
- Graduate Students82
- Life Science Researchers78
- Biologists55
- Instructors52
- post-docs47
- Novice44
- bioinformaticians42
- Bioinformaticians33
- Intermediate26
- PhD candidate26
- Scientific community26
- beginner bioinformaticians25
- PhD candidates23
- Scientists22
- Data stewards21
- Bench biologists19
- Data Managers18
- Academia/ Research Institution17
- Industry17
- Non-Profit Organisation17
- Beginners16
- Data Scientist16
- Data Scientists16
- Data managers16
- Trainers16
- life scientists16
- Healthcare15
- PhD Students14
- health professionals13
- Researcher in life sciences13
- data stewards13
- Computational biologists12
- Master students12
- Research Scientists12
- healthcare professionals12
- software developers, bioinformaticians12
- Biomedical Researchers11
- biocurators11
- Biomedical researchers9
- Life scientists9
- Researcher9
- Training Designers9
- Training instructors9
- biologists9
- Health Care Professionals8
- Patient Advocates 8
- PhD8
- Post Docs8
- modelers8
- rare disease patients representatives7
- Beginner7
- Bioinformatician7
- Life scientists with programming skills7
- Clinical Scientists6
- computational scientists6
- data managers6
- plant researchers6
- Chemists5
- General Interest5
- Life Scientists5
- Undergraduate students5
- genomics researchers5
- postdocs5
- postgrad5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Curators4
- Laboratory technicians4
- PI4
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
- Postgraduate students4
- Veterinarians4
- postdoctoral researchers4
- project manager4
- researchers4
- systems biologists4
- Bioinformatician, Bioanalysts3
- Data Steward3
- Database users3
- General Physicians3
- Ontologists3
- Policy makers3
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
- Technicians3
- data steward / data manager3
- geneticists3
- life science researchers3
- medical students3
- postdoc3
- programmers3
- research software engineers and researchers writing code3
- software engineers3
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- Author
- Bérénice Batut73
- Helena Rasche60
- Saskia Hiltemann41
- Anton Nekrutenko28
- Subina Mehta27
- Yvan Le Bras27
- Anthony Bretaudeau23
- The Carpentries22
- Anne Fouilloux21
- Björn Grüning19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Mehmet Tekman17
- Marie Josse15
- Nicola Soranzo15
- Cristóbal Gallardo14
- Julia Jakiela14
- Pratik Jagtap14
- Wendi Bacon14
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- James Johnson13
- Katherine Do13
- Maria Doyle13
- Simon Gladman13
- Wolfgang Maier13
- Anup Kumar12
- Melanie Föll12
- Khaled Jum'ah11
- Paul Zierep11
- Pavankumar Videm11
- Simon Bray11
- Fotis E. Psomopoulos10
- Anika Erxleben9
- Praveen Kumar9
- Anne Pajon8
- Avans Hogeschool8
- Diana Chiang Jurado8
- Emma Leith8
- Joachim Wolff8
- Kaivan Kamali8
- Stéphanie Robin8
- Timothy J. Griffin8
- Alexandre Cormier7
- Anna Syme7
- Beatriz Serrano-Solano7
- Christopher Barnett7
- Daniel Blankenberg7
- Erwan Corre7
- Florian Christoph Sigloch7
- Laura Cooper7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
- Nadia Goué7
- Ray Sajulga7
- Robert Andrews7
- Alex Ostrovsky6
- Andrew Mason6
- Branka Franicevic6
- Coline Royaux6
- Gildas Le Corguillé6
- Jeremy Goecks6
- Junhao Qiu6
- Marius van den Beek6
- Morgan Howells6
- Paulo Cilas Morais Lyra Junior6
- Philippe Rocca-Serra6
- Raphael Mourad6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Dechen Bhuming5
- Diana Pilvar5
- Kellie Snow5
- Korneel Hens5
- Munazah Andrabi5
- Nick Juty5
- Polina Polunina5
- Riccardo Massei5
- Saskia Lawson-Tovey5
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Andrea Bagnacani4
- Clemens Blank4
- Daniela Schneider4
- Engy Nasr4
- Florian Heyl4
- Guillaume Gricourt4
- Helge Hecht4
- Hélène Chiapello4
- Ioana Popescu4
- Jean-Loup Faulon4
- Joan Hérisson4
- Kenza Bazi-Kabbaj4
- Khai Van Dang4
- Lucille Delisle4
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- Contributor
- Saskia Hiltemann451
- Helena Rasche373
- Björn Grüning313
- Bérénice Batut188
- Nicola Soranzo89
- Cristóbal Gallardo79
- Anthony Bretaudeau78
- Wendi Bacon57
- Martin Čech55
- Niall Beard55
- Beatriz Serrano-Solano47
- Teresa Müller46
- Armin Dadras45
- William Durand43
- Mehmet Tekman42
- Gildas Le Corguillé40
- Yvan Le Bras40
- Pavankumar Videm39
- Melanie Föll35
- Anup Kumar32
- Wolfgang Maier32
- Marius van den Beek29
- Marie Josse28
- Subina Mehta28
- Simon Bray24
- Donny Vrins23
- Anne Fouilloux22
- Maria Doyle22
- Nate Coraor22
- Peter van Heusden21
- Leonid Kostrykin20
- Julia Jakiela19
- Anton Nekrutenko18
- Bazante Sanders18
- Tristan Reynolds18
- Deepti Varshney17
- Khaled Jum'ah17
- Lucille Delisle17
- Pratik Jagtap17
- Petros Kountouris16
- Paul Zierep15
- Delphine Lariviere14
- Timothy J. Griffin13
- Daniela Schneider12
- David López12
- Diana Chiang Jurado12
- Mélanie Petera12
- Dave Clements11
- Katarzyna Kamieniecka11
- Marisa Loach11
- Matthias Bernt11
- Pablo Moreno11
- Stéphanie Robin11
- Simon Gladman10
- Anna Syme9
- Mallory Freeberg9
- Alexandre Cormier8
- Amirhossein Naghsh Nilchi8
- Florian Heyl8
- Kaivan Kamali8
- Verena Moosmann8
- Christopher Barnett7
- Katherine Do7
- Melissa Burke7
- Morgan Howells7
- Clemens Blank6
- Ekaterina Polkh6
- Florian Christoph Sigloch6
- Hans-Rudolf Hotz6
- Paulo Cilas Morais Lyra Junior6
- Alireza Khanteymoori5
- Bert Droesbeke5
- Clea Siguret5
- Fabio Cumbo5
- Linelle Abueg5
- Riccardo Massei5
- Wandrille Duchemin5
- olisand5
- Andrea Bagnacani4
- Coline Royaux4
- Fotis E. Psomopoulos4
- Joachim Wolff4
- Laura Leroi4
- Nadia Goué4
- Natalie Whitaker-Allen4
- Romane LIBOUBAN4
- Solenne Correard4
- Sotiroula Chatzimatthaiou4
- Anika Erxleben3
- Eli Chadwick3
- Engy Nasr3
- Enis Afgan3
- Erwan Corre3
- Jasper Ouwerkerk3
- Jennifer Hillman-Jackson3
- Kenza Bazi-Kabbaj3
- Krzysztof Poterlowicz3
- Maria Christina Maniou3
- Martijn Kersloot3
- Mateo Boudet3
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- Resource type
- e-learning435
- slides96
- Training materials18
- Lecture16
- Presentation16
- hands-on tutorial14
- lessons8
- course materials2
- Course materials1
- E-Learning1
- Online material1
- Tutorial1
- online course1
- tutorial1
- tutorials1
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- Related resource
- Associated Training Datasets326
- Associated Workflows305
- Jupyter Notebook (with Solutions)51
- Jupyter Notebook (without Solutions)51
- Quarto/RMarkdown Notebook5
- Data Visualisation (theory) 1
- R basics1
- RNA-seq data package1
- compareMS21
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- Node
- Cyprus16
- Netherlands11
- Estonia8
- France2
- Sweden1
- Switzerland1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community5
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Federated Human Data Community1
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- Status
- Active30
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