TeSS (Training eSupport System)

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- Scientific topic
- MicroRNA sequencing22
- RNA sequencing22
- RNA-Seq22
- RNA-Seq analysis22
- Small RNA sequencing22
- Small RNA-Seq22
- Small-Seq22
- Transcriptome profiling22
- WTSS22
- Whole transcriptome shotgun sequencing22
- miRNA-seq22
- Bayesian methods14
- Biostatistics14
- Descriptive statistics14
- Gaussian processes14
- Inferential statistics14
- Markov processes14
- Multivariate statistics14
- Probabilistic graphical model14
- Probability14
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- Statistics and probability14
- Exomes8
- Genome annotation8
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- Personal genomics8
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- ChIP-exo5
- ChIP-seq5
- ChIP-sequencing5
- Chip Seq5
- Chip sequencing5
- Chip-sequencing5
- Bottom-up proteomics4
- Discovery proteomics4
- MS-based targeted proteomics4
- MS-based untargeted proteomics4
- Metaproteomics4
- Peptide identification4
- Protein and peptide identification4
- Proteomics4
- Quantitative proteomics4
- Targeted proteomics4
- Top-down proteomics4
- Chromosome walking2
- Clone verification2
- DNA-Seq2
- DNase-Seq2
- High throughput sequencing2
- High-throughput sequencing2
- NGS2
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- Active learning1
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- Annotation9
- Data visualisation5
- Molecular visualisation5
- Plotting5
- Rendering5
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- Functional enrichment analysis4
- GSEA4
- Gene set analysis4
- Gene-set enrichment analysis4
- Gene-set over-represenation analysis4
- Methylation analysis4
- Methylation profile analysis4
- Allele calling3
- Exome variant detection3
- Genome variant detection3
- Germ line variant calling3
- Mutation detection3
- Somatic variant calling3
- Variant calling3
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- de novo mutation detection3
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- Tool
- Bioconductor
- Galaxy364
- FastQC36
- SAMtools27
- MultiQC26
- BWA21
- REDCap20
- Data Stewardship Wizard19
- BEDTools17
- fastp16
- scikit-learn16
- JBrowse15
- SCANPY15
- Falco14
- Cutadapt13
- DeepTools13
- ggplot213
- BLAST12
- QUAST12
- BUSCO11
- RStudio11
- STAR11
- GEMINI10
- Galaxy Image Analysis10
- scikit-image10
- taxonomy_krona_chart10
- FreeBayes9
- NanoPlot9
- RDMkit9
- Trimmomatic9
- Bandage8
- FASTX-Toolkit8
- BCFtools7
- BamTools7
- Biopython7
- HISAT27
- Trim Galore7
- msConvert7
- seqtk7
- Flye6
- MAFFT6
- MaxQuant6
- Minimap26
- Ontology Lookup Service6
- Open Babel6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- BridgeDb5
- COPASI5
- DESeq25
- European Nucleotide Archive (ENA)5
- Galactic Circos5
- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
- Salmon5
- StringTie5
- anndata5
- annotatemyids5
- compute_sequence_length5
- gffcompare5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Chipster4
- Diamond4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- QualiMap4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- BridgeDbR3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
- OMArk3
- OMERO3
- R3
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- Content provider
- Bioconductor241
- Centre for Genomic Regulation (CRG)1
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- Keyword
- Intro9
- Workshop8
- R/Bioconductor6
- Conference4
- Data Representation4
- Large Data4
- RNAseq4
- Workflows4
- Big data3
- Best Practices2
- Graphics2
- Overview2
- Packages2
- Performance2
- R2
- Scalable Computing2
- Sequence Analysis2
- eQTL2
- introduction2
- Appendix1
- BIoinformatics1
- Bioconductor1
- ChIP-seq1
- Copy Number1
- Course1
- Data Integration1
- Devel1
- Enrichment1
- Epigenomics1
- Experimental design1
- GSEA1
- Genomic data1
- GenomicRanges1
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- Intermediate1
- Keynote1
- Large data1
- LargeData1
- Meta-analysis1
- Metagenomics1
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- Microbiome1
- Nextflow1
- Pathway1
- RNA-seq1
- RStudio1
- Reproducibility1
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- Status1
- SummarizedExperiment1
- Technology1
- Transcriptomics1
- eQTL / molecular-QTL1
- nf-co.re1
- workflows1
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- Competency level
- Not specified241
- Beginner1
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- Licence
- License Not Specified241
- MIT License1
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- Target audience
- Biologists interested in learning about RNA-seq1
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- Author
- Martin Morgan96
- Various11
- Vincent Carey7
- Wolfgang Huber7
- Levi Waldron6
- Michael Lawrence6
- Michael Love6
- Simon Anders6
- Laurent Gatto5
- Lori Shepherd5
- Sonali Arora5
- Hervé Pagès4
- Mike Smith4
- Various authors4
- Aaron Lun3
- Charlotte Soneson3
- Houtan Noushmehr3
- Jenny Bryan3
- Kasper Hansen3
- Stephanie Hicks3
- Aleksandra Pȩkowska2
- Daniel van Twisk2
- James MacDonald2
- Marc Carlson2
- Nan Xiao2
- Nitesh Turaga2
- Paul Pyl2
- Robert Gentleman2
- Aedin Culhane1
- Alejandro Reyes1
- Alejandro Reyes; Mike Smith1
- Andrzej Oleś1
- Anna Delgado Tejedor1
- Benilton Carvalho1
- Constantin Ahlmann-Eltze1
- Dario Righelli1
- Davide Risso1
- Dirk Eddelbuettel1
- Erik Wright1
- Fabian Andrade Lozano1
- Gabe Becker1
- Helena Crowell1
- Jacqueline Buros1
- Jeroen Ooms1
- Jiefei Wang1
- Julia Ponomarenko1
- Julie Zhu1
- Leonard Goldstein1
- Luca Cozzuto1
- Marcel Ramos1
- Matt Ritchie1
- Michael Love et al.1
- Mike Love1
- Nicholas Cooley1
- Nils Eling1
- Paul Theodor Pyl1
- Pete Hickey1
- Robert Castelo1
- Sarah Bonnin1
- Sean Davis1
- Simon Anders; Michael Love; Charlotte Soneson1
- Steffen Neumann1
- Thomas Girke1
- Tom Carroll1
- Toni Hermoso Pulido1
- Unknown1
- Valerie Obenchain1
- Vince Carey1
- Vincent J. Carey1
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- Antonia Taiani1
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- Resource type
- Talk53
- Course materials1
- Training materials1
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- Spain1
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- Single-cell Omics Community - collection of courses and materials2
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- Active1
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Training materials

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242 materials found

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Training materials

Continuous integration with Github Actions

BiocCheck-a-thon check in

Discussion about unit testing

Bioconductor and R 4.0

Bioc vs. CRAN build systems

Update: Bioconductor Images

Quantifying and lightening the package dependency burden

Windows and Rtools 4.0

Working with DNA Sequences

Liftr & sbgr