Training materials
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e-learning
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
• BeginnerMetagenomics Microbial ecology Genomics Microbiology Sequence analysis Mobile genetic elements Microbiome -
sib-swiss/cancer-variants-training
Variant pattern analysis Genomics Sequencing Variant analysis Next generation sequencing Genomics
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stjude/learngenomics.dev
Variant pattern analysis Genomics Sequencing General Genomics Next generation sequencing Variant analysis
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digo4/Clinical-Genomics
Variant pattern analysis Genomics Sequencing Variant analysis Genomics Next generation sequencing
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pachterlab/BI-BE-CS-183-2023
Single-cell sequencing RNA-Seq Genomics Sequencing Transcriptomics Statistics and probability General Statistics Next generation sequencing Genomics …
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fhdsl/Choosing_Genomics_Tools
RNA-Seq Single-cell sequencing Variant pattern analysis Genome annotation ChIP-seq Epigenetics Genomics Sequencing Transcriptomics Genomics …
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gladstone-institutes/Bioinformatics-Workshops
Single-cell sequencing RNA-Seq Pathway or network Data visualisation Genomics Transcriptomics Machine learning Statistics and probability General R …
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e-learning
Decontamination of a genome assembly
• BeginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• BeginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
Tutorial, Training materials, Bioinformatics
How to use REPET software for de novo annotation of transposable elements in genomes
• BeginnerGenomics Structural variation Bioinformatics Genome annotation Sequence classification Transposons Annotation Pipelines Docker