Training materials
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e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• IntermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
e-learning
Masking repeats with RepeatMasker
• BeginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Genome annotation with Funannotate
•• IntermediateGenomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1 -
e-learning
Chloroplast genome assembly
• BeginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants -
e-learning
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• IntermediateSequence assembly Assembly biodiversity covid19 -
e-learning
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
•• IntermediateSequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio -
e-learning
Genome assembly using PacBio data
•• IntermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• IntermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio -
e-learning
Unicycler Assembly
• BeginnerSequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote -
e-learning
RAD-Seq de-novo data analysis
• BeginnerEcology Biodiversity EBV dataset EBV workflow Ecology RAD-seq biodiversity genetic composition EBV class species populations EBV class