Training materials
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e-learning
Best practices for workflows in GitHub repositories
• BeginnerFAIR Data, Workflows, and Research jupyter-notebook ro-crate -
e-learning
Inferring single cell trajectories with Monocle3 (R)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Python - Coding Style
•• IntermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Virtual Environments For Software Development
•• IntermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Conda Environments For Software Development
•• IntermediateSoftware engineering Foundations of Data Science conda jupyter-notebook -
e-learning
Python - Type annotations
•• IntermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Python - Multiprocessing
••• AdvancedSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Python - Testing
•• IntermediateSoftware engineering Foundations of Data Science jupyter-notebook -
e-learning
Inferring single cell trajectories with Scanpy (Python)
• BeginnerTranscriptomics MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Scripting Galaxy using the API and BioBlend
• BeginnerSoftware engineering Development in Galaxy jupyter-notebook