Training materials
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e-learning
Neoantigen 5b: IEDB binding Validated Neopeptides
• BeginnerProteomics Proteomics label-free -
e-learning
Neoantigen 5a: Predicting HLA Binding
• BeginnerProteomics Proteomics label-free -
e-learning
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
• BeginnerMetagenomics Microbial ecology Genomics Microbiology Sequence analysis Mobile genetic elements Microbiome -
e-learning
Data submission using ENA upload Tool
• BeginnerEcology Biodiversity Ecology biodiversity -
lessons
Prompting 101 - A Beginner's Guide to Communicating with LLMs
• BeginnerNatural language processing prompting ChatGPT Gemini Claude Perplexity NotebookLM prompt engineering LLM -
e-learning
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
•• IntermediateImaging Data handling Data management Data sharing Imaging ROI selection -
slides
An earth-system RO-Crate
• BeginnerFAIR Data, Workflows, and Research earth-system marine omics ocean ro-crate -
Course materials
Creating a reproducible report using julia and pythontex
•• Intermediatescientific writing Julia LaTeX Reproducible Science Reproducible Research -
e-learning
Tracking of mitochondria and capturing mitoflashes
•• IntermediateImaging Imaging Isolated object tracking Temporal analysis Time-lapse data -
slides
Intro to DataPLANT ARCs
• BeginnerFAIR Data Workflows and Research