Materials - TeSS (Training eSupport System)

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- Scientific topic
- Data management31
- Metadata management31
- Research data management (RDM)31
- FAIR data15
- Findable, accessible, interoperable, reusable data15
- Biomedical informatics12
- Clinical informatics12
- Cloud computing12
- Computer science12
- HPC12
- Health and disease12
- Health informatics12
- Healthcare informatics12
- High performance computing12
- High-performance computing12
- Medical informatics12
- Applied ontology9
- Network9
- Ontologies9
- Ontology9
- Ontology and terminology9
- Ontology relations9
- Pathway9
- Pathway or network9
- Phylogenetics9
- Terminology9
- Upper ontology9
- Data integration7
- Data integration and warehousing7
- Data warehousing7
- Exomes6
- Genome annotation6
- Genomes6
- Genomics6
- Personal genomics6
- Synthetic genomics6
- Viral genomics6
- Whole genomes6
- Rare diseases5
- Simulation experiment5
- Bioinformatics4
- Data archival3
- Data archiving3
- Data curation3
- Data curation and archival3
- Data preservation3
- Database curation3
- MicroRNA sequencing3
- RNA sequencing3
- RNA-Seq3
- RNA-Seq analysis3
- Research data archiving3
- Small RNA sequencing3
- Small RNA-Seq3
- Small-Seq3
- Transcriptome profiling3
- WTSS3
- Whole transcriptome shotgun sequencing3
- miRNA-seq3
- Active learning2
- Biological modelling2
- Biological system modelling2
- Botany2
- Data analysis2
- Data architecture2
- Data architecture, analysis and design2
- Data design2
- Data governance2
- Ensembl learning2
- Kernel methods2
- Knowledge representation2
- Machine learning2
- Neural networks2
- Plant2
- Plant anatomy2
- Plant biology2
- Plant cell biology2
- Plant ecology2
- Plant genetics2
- Plant physiology2
- Plant science2
- Plants2
- Recommender system2
- Reinforcement learning2
- Supervised learning2
- Systems biology2
- Systems modelling2
- Unsupervised learning2
- Algorithms1
- Antimicrobial stewardship1
- Biological processes1
- Biomathematics1
- Biomimeic chemistry1
- Bottom-up proteomics1
- Chromosome walking1
- Clone verification1
- Comparative transcriptomics1
- Computational biology1
- Computer programming1
- DNA-Seq1
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- Operation
- Data handling7
- File handling7
- File processing7
- Processing7
- Report handling7
- Utility operation7
- Data visualisation6
- Molecular visualisation6
- Plotting6
- Rendering6
- Visualisation6
- Database retrieval5
- Mathematical modelling5
- Modelling and simulation5
- Query5
- Query and retrieval5
- Data extraction4
- Data retrieval4
- Data retrieval (metadata)4
- Metadata retrieval4
- Normalisation4
- Retrieval4
- Standardisation4
- Standardisation and normalisation4
- Data analysis2
- Database search2
- Design2
- Search2
- Ontology browsing1
- Ontology visualisation1
- Peptide database search1
- Peptide identification1
- Peptide-spectrum-matching1
- Quality control1
- Validation1
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- Tool
- REDCap20
- COPASI5
- Chipster4
- OMERO2
- Ontology Lookup Service2
- Zooma2
- ChEBI1
- Data Stewardship Wizard1
- DataDiscovery1
- ProteinProspector1
- RDMkit1
- WheatIS1
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- Standard database or policy
- OBO Foundry2
- Wheat Data Interoperability Guidelines 1
- Crop Ontology1
- DisProt1
- Minimum Information about Plant Phenotyping Experiment1
- Multi-Crop Passport Descriptors1
- Plant Phenotype Experiment Ontology1
- Wheat Trait Ontology1
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- Content provider
- Bioinformatics Visualization52
- ELXIR-UK DaSH47
- CINECA PROJECT13
- SIB Swiss Institute of Bioinformatics12
- CSC - IT Center for Science6
- Centre for Genomic Regulation (CRG)4
- European Bioinformatics Institute (EBI)4
- ELIXIR2
- IFB French Institute of Bioinformatics2
- SciLifeLab2
- ELIXIR Slovenia1
- ELIXIR-SI eLearning Platform (EeLP)1
- NanoCommons1
- Seqera1
- VIB Conferences1
- de.NBI1
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- Keyword
- Molecular23
- Genome21
- sensitive data19
- REDCap19
- Anatomy Physiology and Atlases11
- Clinical data11
- plant phenotyping11
- FAIR10
- metadata10
- Cells and Organisms9
- Pathway9
- Phylogenetics9
- REMBI9
- RDF8
- Knowledge graph7
- Ontologies7
- Populations7
- data management7
- Communication6
- biotic interactions6
- insects6
- intercropping6
- plant disease6
- wheat6
- AI based tools5
- ELIXIR-CONVERGE5
- FEGA5
- Federated EGA5
- Information visualisation5
- Ontology5
- Query data5
- Rare Diseases & Research5
- SPARQL5
- Standards5
- data5
- data stewardship5
- nutrients5
- orchard5
- physicochmical properties of soil5
- sensitive data5
- sensitive human data5
- software tools5
- soil biology5
- soil carbon5
- COPASI4
- Computational modelling4
- ComputationalBiology4
- FastQC4
- Kinetic modeling4
- Plant Phenotyping4
- SystemsBiology4
- agricultural management4
- data harmonization4
- first dynamics4
- natural and agricultural ecosystems4
- remote sensing4
- Annotation3
- Data integration3
- Data management3
- Data managment plan3
- ELIXIR Converge3
- Envirotyping3
- FAIR data3
- Genomics3
- GraphDB3
- HCI3
- Interoperability3
- SNOMED CT3
- Semantic Framework3
- Sequencing3
- data management plan3
- data sharing3
- RNA-Seq2
- ATC2
- CHOP2
- Cohort data2
- Data Steward2
- Data management plan2
- Data sharing2
- Data storage2
- EeLP2
- FASTQ2
- Image Data2
- LOINC2
- Open science2
- Standardised vocabulary2
- Triplestore2
- Versioning of Terminology2
- bioimage2
- bioinformatics2
- data storage2
- eLearning2
- envirotyping2
- transcriptomics2
- AAI 1
- Accessibility1
- ArrayExpress1
- Auhtorisation1
- Automation1
- Bioinformatics1
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- Competency level
- Not specified127
- Beginner44
- Intermediate17
- Advanced3
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- Licence
- License Not Specified96
- Creative Commons Attribution 4.0 International39
- Creative Commons Attribution Share Alike 4.0 International31
- Creative Commons Attribution Non Commercial Share Alike 4.0 International12
- Creative Commons Attribution 1.0 Generic5
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International5
- Creative Commons Attribution No Derivatives 4.0 International2
- Creative Commons Attribution Non Commercial 4.0 International1
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- Target audience
- Bioinformaticians14
- Data Managers12
- Data Scientists12
- Research Scientists12
- Biomedical Researchers11
- Life Science Researchers10
- Researchers10
- health professionals4
- Biologists4
- Computational biologists4
- data stewards4
- modelers4
- Health Care Professionals3
- PhD students3
- Post Docs3
- data managers3
- software developers, bioinformaticians3
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Ontologists2
- Undergraduate students2
- bioinformaticians2
- Biochemists1
- Biologists, Genomicists, Computer Scientists1
- Biomedical researchers1
- Biotechnology Companies1
- Clinicians1
- Data Access Committeses from the EGA1
- Data scientists1
- General Physicians1
- Master students1
- Microbiologists1
- PhD candidates1
- Primary care doctors1
- Professors1
- Public Health Professionals1
- Research scientists1
- Researcher in life sciences1
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA1
- Researchers and bioinformaticians involved in the VEIS project1
- Scientists1
- Senior Researchers, Lab Managers, Postdocs and PhD Students with basic knowledge of DMPs. Participants in the "Introduction to Data Management Plans" workshop.1
- biocurators1
- data curators1
- genomics researchers1
- life scientists1
- mass spectrometry1
- medical students1
- plant researchers1
- postdoctoral researchers1
- researchers1
- researchers, educators, and research support staff1
- tool developers1
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- Author
- Saskia Lawson-Tovey19
- Personalized Health Informatics Group12
- Laura Cooper11
- Andrew Mason6
- Vasundra Touré6
- Eija Korpelainen5
- Emma Karoune5
- Marta Lloret Llinares5
- Emma Griffiths4
- Maria Lehtivaara4
- Elvina Gountouna3
- Brian Klahn2
- Cyril Pommier2
- Deepak Unni2
- Elvina Goutana2
- Ettore Murabito2
- Jan Slifka2
- Morris Riedel2
- Petar Horki2
- Philip Krauss2
- Sara Morsy2
- Siiri Fuchs2
- Alexander Botzki1
- Anastasia Chasapi1
- Anne-Françoise Adam-Blondon1
- Annunziata De Luisi1
- Anu Mikkonen1
- Ave Tooming-Klunderud1
- Branka Franicevic1
- Brian Kilburn1
- Carlos Martinez Ortiz1
- Carmela Gissi1
- Dalia Alghamdi1
- Daniel Wibberg1
- David Corcoran1
- David Rayner1
- Dayane Araujo1
- Elin Kronander1
- Eunkyong Choi1
- Ewan Birney1
- Federica Quaglia1
- Federico Bianchini1
- Fernando Cruz Rodríguez1
- Flora D'Anna1
- Francesca Morello1
- Geraldine Van der Auwera1
- Giada Ferrari1
- Graeme Oatley1
- Griet Den Herder1
- Grégoire Rossier1
- Hadi Quesneville1
- Hanne Elsen1
- Heikki Lehväslaiho1
- Helena Schnitzer1
- Henriette Harmse1
- Ineke Luijten1
- Irene Fabiola Roman Maldonado1
- Jan Lammertyn1
- Jana Freeman1
- Jarno Tuimala1
- Jessica Lindvall1
- Jonathan Manning1
- Jordi Rambla1
- Juha Tornroos1
- Karine Labadie1
- Kees van Bochove1
- Keeva Cochrane1
- Keywan Hassani-Pak1
- Kirill Tsukanov1
- Klaas Vandepoele1
- Kristin Gnodke1
- Kristin Gnodtke1
- Laura Kalliokoski1
- Laura Standaert1
- Laurie Bertrand1
- Leonardo Girlanda1
- Lily Shiue1
- Lorenzo Ballini1
- Manuel Lera-Ramirez1
- Marc Christian Heuermann1
- Marcel Ribeiro-Dantas1
- Marek Suchanek1
- Maria Gyftea1
- Maria Laura Aguilera Gil1
- Maria Levchenko1
- Marko Petek1
- Marta Teperek1
- Martin Zablocki1
- Matrix Science Ltd1
- Michael Alaux1
- Michaela Th. Mayrhofer1
- Michiel Van Bel1
- Mijke Jetten1
- Mikael Linden1
- Minna Ahokas1
- Morten Skage1
- Nancy George1
- Nazeefa Fatima1
- Nele Pauwels1
- Nicolas Francillonne1
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- Contributor
- Robert Andrews44
- Munazah Andrabi41
- Sabine Österle8
- Branka Franicevic6
- Eija Korpelainen4
- Vasundra Touré3
- Bang Wong2
- Maria Lehtivaara2
- Martin Krzywinski2
- Ph.D.2
- Prof. Frederic Fol Leymarie2
- Prof. Michael J E Sternberg2
- Stephen Taylor2
- Abeni Wickham1
- Alvaro Gonzalez1
- Amanda Klein1
- Ana Melo1
- Andreas Lundquist1
- Andrew Mason1
- Anil S. Thanki1
- Anne-Françoise Adam-Blondon1
- Christopher Erdmann1
- Cyril Pommier1
- Célia Michotey1
- Derek Wright1
- Dr. A.J. Pretorius1
- Dr. Alexander Lex1
- Dr. Bernard de Bono1
- Dr. Colin Combe1
- Dr. Jim Procter1
- Dr. Manuel Corpas1
- Dr. Nils Gehlenborg1
- Dr. Roy Ruddle1
- Dr. Scooter Morris1
- Dr. Sean I O’Donoghue1
- Dr. Simon Andrews1
- Dr. Simon Tomlinson1
- Dr. Steve Jupe1
- Dr. Ting Wang1
- ELIXIR-CONVERGE WP2 members1
- Edoardo Salladini1
- Elisabeth Busch1
- Elvina Gountouna1
- Emma Karoune1
- Erik Stattin1
- Hampus Pehrsson Ternström1
- Jalview Coordinator1
- Janina Müller1
- Jill Jaworski1
- Jonas Åkerman1
- Jordi Rambla1
- Juha Tornroos1
- Karin Westin Tikkanen1
- Kristen Schroeder1
- Laura Cooper1
- Lotta Waesterberg Tomasson1
- Marco Schiavina1
- Martin Strauch1
- Michael Ball1
- Oliver Davis1
- PhD BSc FSB1
- Philip Krauss1
- Prof. David Willaim Burt1
- Prof. Jessie Kennedy1
- Prof. Marc Streit1
- Prof. Richard Baldock1
- Prof. Rod Page1
- Prof. Thomas Ferrin1
- Prof. Tom Freeman1
- Richard Williams1
- Sabela de la Torre1
- Sabina Anderberg1
- Sabina Leonelli1
- Sanna Isabel Ulfsparre1
- Sara Belfrage1
- Saskia Lawson-Tovey1
- Stefan Negru1
- Taner Sen1
- Teemu Kataja1
- Tiitu Peltola1
- Till Brückner1
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- Resource type
- Video
- e-learning715
- Recorded webinar301
- slides184
- Tutorial121
- Training materials71
- Presentation62
- Course materials60
- Webinar53
- lessons50
- tutorial48
- Slides45
- hands-on tutorial38
- video38
- Slidedeck31
- Documentation28
- course materials25
- exercise25
- Scripts20
- Exercise18
- Handout17
- Lecture16
- Poster16
- Slideshow13
- E-learning9
- PDF9
- E-Learning8
- Online material6
- Bioinformatics5
- Coding5
- Talk5
- tutorials5
- youtube video5
- Series of videos4
- Jupyter notebook4
- online course4
- online modules4
- Book3
- Computational Biology3
- Computer Science3
- Data Science3
- Education3
- How-to guide3
- Life Sciences Literature Database3
- Mock data3
- Programming3
- examples3
- online tutorial3
- slideck/ presentation3
- API reference2
- Computer Software2
- Installation instructions2
- Learning pathway2
- Manual2
- Open educational resource2
- Series of videos2
- Vignette2
- case studies2
- e-Learning2
- educational materials2
- handbook2
- knowledgebase2
- presentation2
- scripts2
- workflow2
- Blog post1
- Carpentries style curriculum1
- E-learning + workshop1
- Educational Resource1
- FREE online course1
- Jupyter notebooks1
- Life Science Literature Database1
- Machine Learning1
- Metadata Registry1
- Notes1
- R Shiny application1
- Recording1
- Tool1
- Toolkit1
- Training materials with mock data1
- Transcriptomics1
- ViralZone1
- Workshop1
- additional reading1
- didactic activities1
- hackathon1
- implementation guidelines1
- podcast1
- slide deck / presentation1
- slides / presentation1
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- Related resource
- Data Stewardship Wizard3
- Slides3
- Workshop recording3
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- CanCOGeN1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- EGA Submitter Portal Tutorial1
- GEEM1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Introduction to the EGA and sharing sensitive data1
- Next generation biobanking ontology (NGBO)1
- OpenCloning1
- Public Health Alliance for Genomic Epidemiology1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
- VEIS webinar: The essentials of DUO codes | Presentation1
- VEIS webinar: The essentials of DUO codes | Video1
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- Node
- United Kingdom49
- EMBL-EBI18
- Switzerland13
- Finland9
- Belgium5
- Czech Republic5
- Spain5
- France3
- Germany3
- Slovenia3
- Sweden2
- Greece1
- Italy1
- Luxembourg1
- Netherlands1
- Norway1
- Portugal1
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- Collection
- PHENotyping and EnviroTyping (PHENET training collection)19
- RDMbites: REDCap18
- RDMbites: Image data11
- RDMbites: Sequencing data6
- ELIXIR Federated Human Data Community5
- RDMbites: Sensitive data5
- PINK project3
- RDMbites: Data management essentials3
- VEIS - Value of the EGA for Industry and Society3
- Elements of Data Management2
- ELIXIR Toxicology Community1
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- Status
- Active25
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