Training materials
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e-learning
Inferring single cell trajectories with Scanpy (Python)
• BeginnerTranscriptomics MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Comparative gene analysis in unannotated genomes
• BeginnerGenomics Gene and protein families Sequence analysis Phylogeny Comparative genomics Genome Annotation annotation biodiversity cookbook eukaryote … -
e-learning
Genome Assembly Quality Control
•• IntermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
e-learning
Refining Genome Annotations with Apollo (eukaryotes)
•• IntermediateGenomics Genome Annotation apollo2 biodiversity cyoa eukaryote gmod jbrowse1 -
e-learning
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• BeginnerGenetic variation Variant Analysis covid19 one-health virology -
e-learning
Exome sequencing data analysis for diagnosing a genetic disease
• BeginnerGenetic variation Variant Analysis -
e-learning
Mapping and molecular identification of phenotype-causing mutations
• BeginnerGenetic variation Variant Analysis -
e-learning
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• IntermediateGenetic variation Variant Analysis covid19 one-health virology -
e-learning
Identification of somatic and germline variants from tumor and normal sample pairs
• BeginnerGenetic variation Variant Analysis -
e-learning
Trio Analysis using Synthetic Datasets from RD-Connect GPAP
••• AdvancedGenetic variation Variant Analysis cyoa