Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Software integration
    • Pipelines15
    • Tool integration15
    • Tool interoperability15
    • Workflows15
    • MicroRNA sequencing4
    • RNA sequencing4
    • RNA-Seq4
    • RNA-Seq analysis4
    • Small RNA sequencing4
    • Small RNA-Seq4
    • Small-Seq4
    • Transcriptome profiling4
    • Variant pattern analysis4
    • WTSS4
    • Whole transcriptome shotgun sequencing4
    • miRNA-seq4
    • Genome annotation3
    • Bioinformatics2
    • Breakend assembly2
    • Comparative transcriptomics2
    • DNA methylation2
    • Epigenetics2
    • Functional genome annotation2
    • Genome assembly2
    • Genomic assembly2
    • Histone modification2
    • Metagenome annotation2
    • Metagenomics2
    • Methylation profiles2
    • Sequence assembly (genome assembly)2
    • Shotgun metagenomics2
    • Structural genome annotation2
    • Transcriptome2
    • Transcriptomics2
    • Algorithms1
    • Antimicrobial stewardship1
    • ChIP-exo1
    • ChIP-seq1
    • ChIP-sequencing1
    • Chip Seq1
    • Chip sequencing1
    • Chip-sequencing1
    • Chromosome walking1
    • Clone verification1
    • Comparative genomics1
    • Computer programming1
    • DNA-Seq1
    • DNase-Seq1
    • Data management1
    • Data rendering1
    • Data structures1
    • Data visualisation1
    • Exomes1
    • FAIR data1
    • Findable, accessible, interoperable, reusable data1
    • Genomes1
    • Genomics1
    • High throughput sequencing1
    • High-throughput sequencing1
    • Medical microbiology1
    • Metadata management1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Molecular infection biology1
    • Molecular microbiology1
    • NGS1
    • NGS data analysis1
    • Next gen sequencing1
    • Next generation sequencing1
    • Panels1
    • Personal genomics1
    • Primer walking1
    • Programming languages1
    • Research data management (RDM)1
    • Sanger sequencing1
    • Sequencing1
    • Software development1
    • Software engineering1
    • Synthetic genomics1
    • Targeted next-generation sequencing panels1
    • Viral genomics1
    • Whole genomes1
    • Workflow1
    • Show N_FILTERS more
    • Tool
    • BioContainers1
    • Bioconductor1
    • DESeq1
    • Enrichr1
    • FastQC1
    • GSEA1
    • MultiQC1
    • Nextflow1
    • QualiMap1
    • RStudio1
    • SAMtools1
    • STAR1
    • Salmon1
    • Trim Galore1
    • UCSC Genome Browser1
    • biomaRt1
    • ggplot21
    • nf-core-rnaseq1
    • Show N_FILTERS more
    • Content provider
    • Glittr.org12
    • Centre for Genomic Regulation (CRG)1
    • European Bioinformatics Institute (EBI)1
    • VIB Training & Conferences1
    • Show N_FILTERS more
    • Keyword
    • Nextflow
    • Workflows29
    • Snakemake6
    • Reproducibility5
    • CWL4
    • Containerization4
    • Data visualization3
    • R3
    • RNA-seq3
    • Variant analysis3
    • ATAC-seq2
    • Bioinformatics2
    • Docker2
    • EOSC-Life2
    • Epigenetics2
    • FAIR2
    • Galaxy2
    • Genomics2
    • HPC2
    • Machine learning2
    • Transcriptomics2
    • Unix/Linux2
    • Version control2
    • commonwl2
    • Variant-calling1
    • Automated testing1
    • BIoinformatics1
    • Building blocks1
    • ChIP-seq1
    • Cloud1
    • Cloud computing1
    • Command line1
    • Comparative genomics1
    • Containers1
    • DSL21
    • Data analysis1
    • Data management1
    • Data science1
    • EDAM1
    • EeLP1
    • General1
    • Genome annotation1
    • Genome assembly1
    • Health Services1
    • High performance computing1
    • Metagenomics1
    • NGS bioinformatics1
    • NextFlow1
    • Open Access1
    • Open Science1
    • Open Source Software1
    • Open source code1
    • Pipelines1
    • Python1
    • Python for Data Analysis1
    • R Programming1
    • RAP1
    • RStudio1
    • Reproducible Analytical Pipeline1
    • Reproducible Environment1
    • Reproducible Research1
    • Reproducible Science1
    • Research software1
    • Shell1
    • SimPy1
    • Simulation1
    • Singularity1
    • SnakeMake1
    • Statistics1
    • WorkflowHub1
    • building blocks1
    • common workflow language1
    • coronavirus1
    • cwl1
    • discrete-event simulation1
    • eLearning1
    • nf-co.re1
    • reproduce1
    • reproducible research1
    • sciworkflows1
    • simmer1
    • workflows1
    • Show N_FILTERS more
    • Competency level
    • Not specified13
    • Beginner2
    • Show N_FILTERS more
    • Licence
    • License Not Specified9
    • MIT License4
    • Apache License 2.01
    • GNU General Public License v3.0 only1
    • Show N_FILTERS more
    • Target audience
    • Biologists interested in learning about RNA-seq1
    • Clinicians1
    • PhD students1
    • bioinformaticians1
    • Show N_FILTERS more
    • Author
    • Biocore@CRG3
    • Anna Delgado Tejedor1
    • BovReg1
    • CRUK CI Bioinformatics Core1
    • Fabian Andrade Lozano1
    • Genome Informatics Facility1
    • Julia Ponomarenko1
    • Kobe Lavaerts1
    • Kris Davie1
    • Luca Cozzuto1
    • Sarah Bonnin1
    • Sateesh_Peri1
    • Seqera1
    • Steff Taelman1
    • Sydney Informatics Hub1
    • The Carpentries Incubator1
    • Toni Hermoso Pulido1
    • Tuur Muyldermans1
    • VIB Technologies: Training material and software projects1
    • VIB Training & Conferences1
    • Show N_FILTERS more
    • Contributor
    • Jose Espinosa-Carrasco3
    • Luca Cozzuto3
    • Toni Hermoso Pulido3
    • Chris Hakkaart2
    • Julia Ponomarenko2
    • Marcel Ribeiro-Dantas2
    • Sateesh_Peri2
    • Tuur Muyldermans2
    • Abhinav Sharma1
    • Adam Talbot1
    • Adelme Bazin1
    • Aleksandra E. Badaczewska-Dawid1
    • Alexander1
    • Alexander Botzki1
    • Anabella Trigila1
    • Andrew Severin1
    • Antonia Taiani1
    • Arun Seetharam1
    • Balázs Brankovics1
    • Bruna Piereck1
    • Chia Sin Liew1
    • Chris Fields1
    • Chris Wyatt1
    • Christian Brueffer1
    • Christopher Bottoms1
    • Christopher Harrison1
    • Claire Fraser1
    • Cris Tuñí i Domínguez1
    • Desk35051
    • Diana Marek1
    • Edward Wallace1
    • Emre Çevik1
    • Ephantus Wambui1
    • Erik Fasterius1
    • Erin McAuley1
    • Esha Joshi1
    • Evan Floden1
    • Florian Wuennemann1
    • Friederike Hanssen1
    • Georgie Samaha1
    • Geraldine Van der Auwera1
    • GitBook Bot1
    • Gleison1
    • Gordon McDonald1
    • Graeme Grimes1
    • Harshil Patel1
    • Iara Souza1
    • Igor Trujnara1
    • Jaeung Jang1
    • Jake Broughton1
    • Jennifer Chang1
    • Jonathan Manning1
    • Jorge Aguilera1
    • Joshua Vogel1
    • João Cavalcante1
    • Juan Esteban Arango Ossa1
    • Justice Tresor NGOM1
    • Ken Brewer1
    • Kobe Lavaerts1
    • Kris Davie1
    • Kristina Gagalova1
    • Kübra Narcı1
    • Larissa Brito1
    • Lee Je-Hee1
    • Llewellyn vd Berg1
    • Louis Le Nézet1
    • Mahesh Binzer-Panchal1
    • Maria Asplund1
    • Mariana Dias Guilardi1
    • Maryam1
    • Matt Eldridge1
    • Matteo Fiandesio1
    • Matthias De Smet1
    • Matthias Hörtenhuber1
    • Maxime U Garcia1
    • Mihai Todor1
    • Munish Chouhan1
    • Nicolas Vannieuwkerke1
    • Nurlan Kerimov1
    • Paolo Di Tommaso1
    • Phil Ewels1
    • Pontus Höjer1
    • Raquel Manzano1
    • Richard Bowers1
    • Rick Masonbrink1
    • Rintze M. Zelle, PhD1
    • Robert (Bob) Turner1
    • Robert Syme1
    • Sarah Bonnin1
    • Sergio M. Latorre1
    • Sharu Paul Sharma1
    • Siva Chudalayandi1
    • Stathis1
    • Steff Taelman1
    • Stephen Turner1
    • Sude Karaoğlan1
    • Tayab Soomro1
    • Tayná Fiúza1
    • Tim Dunn1
    • Toby Hodges1
    • Show N_FILTERS more
    • Resource type
    • Course materials1
    • Presentation1
    • Training materials1
    • course materials1
    • e-learning1
    • Show N_FILTERS more
    • Node
    • Switzerland12
    • Belgium1
    • EMBL-EBI1
    • Spain1
    • Show N_FILTERS more
    • Collection
    • ELIXIR SIS-Containers - collection of training materials1
    • Show N_FILTERS more
    • Status
    • Active2
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Software integration

and Keywords: Nextflow

15 materials found
  • Training materials, Course materials

    RNA-seq Bioinformatics Course

    ELIXIR node event
    • Beginner
    RNA-Seq Transcriptomics Bioinformatics FAIR data Workflows RNA-seq BIoinformatics Transcriptomics nf-co.re Nextflow …
  • Sydney-Informatics-Hub/customising-nfcore-workshop

    ELIXIR node event
    Workflows Nextflow Workflows
  • bioinformatics-core-shared-training/nextflow_september_2021

    ELIXIR node event
    Workflows Workflows Nextflow
  • biocorecrg/SIB_course_nextflow_Nov_2021

    ELIXIR node event
    Workflows Workflows Nextflow
  • sateeshperi/nextflow_varcal

    ELIXIR node event
    Workflows Variant pattern analysis Workflows Nextflow Variant analysis
  • vibbits/nextflow-workshop

    ELIXIR node event
    Workflows Nextflow Workflows
  • biocorecrg/ELIXIR_containers_nextflow

    ELIXIR node event
    Workflows Workflows Nextflow
  • BovReg/nf-workshop20

    ELIXIR node event
    Workflows Workflows Nextflow
  • biocorecrg/CoursesCRG_Containers_Nextflow_May_2022

    ELIXIR node event
    Workflows Workflows Nextflow
  • vib-training-conferences/nextflow-reproducible-data-analysis

    ELIXIR node event
    Workflows Workflows Nextflow
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.