Training materials
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e-learning
Large genome assembly and polishing
• BeginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
e-learning
Preparing genomic data for phylogeny reconstruction
• BeginnerEcology Biodiversity Ecology biodiversity data handling functional annotation phylogeny -
e-learning
Comparative gene analysis in unannotated genomes
• BeginnerGenomics Gene and protein families Sequence analysis Phylogeny Comparative genomics Genome Annotation annotation biodiversity cookbook eukaryote … -
e-learning
Genome Assembly Quality Control
•• IntermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
e-learning
Refining Genome Annotations with Apollo (eukaryotes)
•• IntermediateGenomics Genome Annotation apollo2 biodiversity cyoa eukaryote gmod jbrowse1 -
e-learning
Functional annotation of protein sequences
• BeginnerGenomics Function analysis Protein sites, features and motifs Genome Annotation biodiversity eukaryote -
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• IntermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
e-learning
Masking repeats with RepeatMasker
• BeginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Genome annotation with Funannotate
•• IntermediateGenomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1 -
e-learning
Chloroplast genome assembly
• BeginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants