Training materials
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e-learning
SARS-CoV-2 Viral Sample Alignment and Variant Visualization
• BeginnerSequence analysis Sequence analysis covid19 gmod jbrowse1 -
Jan Pačes - SARS-CoV-2: Lectures from Evolutionary Biology
Genomics covid19 Genomics evolution
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e-learning
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis
• BeginnerGenetic variation Variant Analysis covid19 one-health virology -
e-learning
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
•• IntermediateGenetic variation Variant Analysis covid19 one-health virology -
e-learning
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads
•• IntermediateSequence assembly Assembly biodiversity covid19 -
e-learning
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
• BeginnerUsing Galaxy and Managing your Data covid19 ncbi -
e-learning
Automating Galaxy workflows using the command line
• BeginnerUsing Galaxy and Managing your Data covid19 variant-analysis workflows -
e-learning
Removal of human reads from SARS-CoV-2 sequencing data
•• IntermediateSequence analysis Sequence analysis covid19 -
e-learning
Submitting sequence data to ENA
•• IntermediateUsing Galaxy and Managing your Data covid19 -
e-learning
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring
•• IntermediateComputational chemistry Computational chemistry covid19 one-health
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