Training materials
- 1
- 2
- Home
- Materials
Filter
Sort
-
-
Filter Clear filters
-
-
Scientific topic
- Assembly
- Biological sequences22
- Sequence analysis22
- Sequence databases22
- Community analysis21
- Environmental microbiology21
- Microbial ecology21
- Microbiome21
- Molecular community analysis21
- Antimicrobial stewardship20
- Exomes20
- Genome annotation20
- Genomes20
- Genomics20
- Medical microbiology20
- Microbial genetics20
- Microbial physiology20
- Microbial surveillance20
- Microbiological surveillance20
- Microbiology20
- Molecular infection biology20
- Molecular microbiology20
- Personal genomics20
- Synthetic genomics20
- Viral genomics20
- Whole genomes20
- Metagenomics19
- Shotgun metagenomics19
- Taxonomy15
- Sequence assembly11
- DNA metabarcoding7
- Environmental metabarcoding7
- Metabarcoding7
- RNA metabarcoding7
- eDNA metabarcoding7
- eRNA metabarcoding7
- De novo genome sequencing6
- Epidemiology6
- Genome sequencing6
- Public health6
- Public health and epidemiology6
- WGS6
- Whole genome resequencing6
- Whole genome sequencing6
- Communicable disease5
- Infectious disease5
- Transmissible disease5
- Bottom-up proteomics4
- Discovery proteomics4
- Gene and protein families4
- Gene families4
- Gene family4
- Gene system4
- Genes, gene family or system4
- MS-based targeted proteomics4
- MS-based untargeted proteomics4
- Metaproteomics4
- Metatranscriptomics4
- Peptide identification4
- Protein and peptide identification4
- Protein families4
- Protein sequence classification4
- Proteogenomics4
- Proteomics4
- Quantitative proteomics4
- Targeted proteomics4
- Top-down proteomics4
- AMR3
- Antibiotic resistance (ABR)3
- Antifungal resistance3
- Antimicrobial resistance3
- Antiprotozoal resistance3
- Antiviral resistance3
- Biodiversity3
- DNA polymorphism3
- DNA variation3
- Evolution3
- Evolutionary biology3
- Extensive drug resistance (XDR)3
- Genetic variation3
- Genomic variation3
- Microsatellites3
- Multidrug resistance3
- Multiple drug resistance (MDR)3
- Multiresistance3
- Mutation3
- Pandrug resistance (PDR)3
- Phylogenetic clocks3
- Phylogenetic dating3
- Phylogenetic simulation3
- Phylogenetic stratigraphy3
- Phylogeny3
- Phylogeny reconstruction3
- Polymorphism3
- RFLP3
- SNP3
- Single nucleotide polymorphism3
- Somatic mutations3
- Total drug resistance (TDR)3
- VNTR3
- Show N_FILTERS more
-
-
-
Tool
- Galaxy11
- FastQC5
- Bandage4
- BamTools3
- QUAST3
- BCFtools2
- BEDTools2
- Flye2
- NanoPlot2
- dRep2
- fastp2
- snippy2
- ABRicate1
- BWA1
- Bakta1
- Bowtie 21
- Bwa-mem21
- COMBAT-TB Workbench1
- CONCOCT1
- CheckM1
- Circos1
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- CoverM1
- Cutadapt1
- Falco1
- FastTree1
- Filtlong1
- FreeBayes1
- Galactic Circos1
- JBrowse1
- Jvarkit1
- KrakenTools1
- MEGAHIT1
- MLST1
- MaxBin1
- Medaka1
- MetaBAT 21
- Minimap21
- MultiQC1
- NGSUtils1
- Newick Utilities1
- Polypolish1
- QualiMap1
- SAMtools1
- SRA Software Toolkit1
- Unicycler1
- Vcflib1
- compute_sequence_length1
- dastool1
- ggplot21
- kraken21
- metaspades1
- seqtk1
- shovill1
- taxonomy_krona_chart1
- Show N_FILTERS more
-
-
-
Content provider
- GTN11
- Show N_FILTERS more
-
-
-
Keyword
- microgalaxy
- Assembly25
- biodiversity13
- assembly9
- prokaryote6
- jbrowse15
- Microbiome4
- nanopore4
- Variant Analysis3
- metagenomics3
- pacbio3
- plants3
- Braker32
- Genome Annotation2
- VGP2
- binning2
- covid192
- eukaryota2
- eukaryote2
- gmod2
- illumina2
- Heatmap1
- Helixer1
- Microbial DNA1
- Nanopore data analysis1
- Pathogens detection1
- Phylogenetic tree1
- QC1
- amr1
- animals1
- cyoa1
- denovo1
- genome1
- genomics1
- one-health1
- polishing1
- quality control1
- tuberculosis1
- Show N_FILTERS more
-
-
-
Competency level
- Beginner8
- Intermediate3
- Show N_FILTERS more
-
-
-
Target audience
- Students11
- Show N_FILTERS more
-
-
-
Contributor
- Bérénice Batut11
- Saskia Hiltemann11
- Helena Rasche10
- Björn Grüning9
- Anthony Bretaudeau6
- Paul Zierep5
- Cristóbal Gallardo4
- Niall Beard4
- Nicola Soranzo4
- Anton Nekrutenko3
- Deepti Varshney3
- Natalie Whitaker-Allen3
- Tristan Reynolds3
- Wolfgang Maier3
- Bazante Sanders2
- Gildas Le Corguillé2
- Maria Doyle2
- Miaomiao Zhou2
- Mélanie Petera2
- Nate Coraor2
- Peter van Heusden2
- Teresa Müller2
- William Durand2
- Alex Ostrovsky1
- Armin Dadras1
- Delphine Lariviere1
- Engy Nasr1
- Enis Afgan1
- Giuseppe Defazio1
- Hans-Rudolf Hotz1
- Jennifer Hillman-Jackson1
- Linelle Abueg1
- Matúš Kalaš1
- Nikos Pechlivanis1
- Polina Polunina1
- Simon Gladman1
- Verena Moosmann1
- Vijay1
- pimarin1
- Show N_FILTERS more
-
-
-
Resource type
- e-learning11
- Show N_FILTERS more
-
-
-
Related resource
- Associated Training Datasets10
- Associated Workflows10
- Show N_FILTERS more
-
- Show materials from all spaces
- Show disabled materials
- Show materials with broken links
- Show archived materials